Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,340,610 – 1,340,719 |
Length | 109 |
Max. P | 0.615043 |
Location | 1,340,610 – 1,340,719 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -36.18 |
Consensus MFE | -17.70 |
Energy contribution | -17.06 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -2.09 |
Structure conservation index | 0.49 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1340610 109 - 22224390 ------ACAAAACAAAAGUCGGUCGCCAACUCCUGUCCCCAGCCAGCAACUGAGCGAAGGAGGGAUAGGAACGGGACGGAACGGCACGGCACGACGACCGAUCGUAUUUCAAGUU ------...........((((((((((...((((((((((.(((((...))).))....).)))))))))...))......((((...)).)).))))))))............. ( -35.90) >DroSec_CAF1 1125 104 - 1 ------ACAAAACAAAAGUCGGUCGCCAGCUCCUGUCCCCCGUCAGCACGUGAGCGAAGGAGGG-----AGCGGGACAGGACGGCACGGCACGACGACCGAUCGUAUUUCAAGUU ------...........((((((((((.(.(((((((((((.((..(.(....).)...)).))-----...)))))))))))))..(......))))))))............. ( -40.60) >DroSim_CAF1 4335 104 - 1 ------ACAAAACAAAAGUCGGUCGCCAGCUCCUGUCCCCCGUCAGCACGUGAGCGAAGGAGGG-----AGCGGGACAGGACGGCACGGCACGACGACCGAUCGUAUUUCAAGUU ------...........((((((((((.(.(((((((((((.((..(.(....).)...)).))-----...)))))))))))))..(......))))))))............. ( -40.60) >DroEre_CAF1 1120 99 - 1 AAAAAAAAAAAACAAAAGUCGGUCGCCAACUCCUGUCCCCCG-GAGCACCUGAGCGCAGGGGCG-----AACGG----------GACGGCACGAUAGCCGAUCGUAUUUCAAGUU ...............(((((((((......(((((((((((.-..((......))...)))).)-----.))))----------)).(((......)))))))).))))...... ( -30.50) >DroYak_CAF1 1336 98 - 1 AAA-AAACAAAACAAAAGUCGGUUGCCAACUCCUGUCCCCCU-GAGCACCUGAGCGAAGGGGAG-----AACGG----------GACGGCACGAUGGCCGAUCGUAUUUCAAGUU ...-.............((((((((((...((((((((((((-..((......))..))))).)-----.))))----------)).)))).....))))))............. ( -33.30) >consensus ______ACAAAACAAAAGUCGGUCGCCAACUCCUGUCCCCCG_CAGCACCUGAGCGAAGGAGGG_____AACGGGAC_G_ACGGCACGGCACGACGACCGAUCGUAUUUCAAGUU .................((((((((.(..(((((...........((......))..))))).........((.............))....).))))))))............. (-17.70 = -17.06 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:58 2006