Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,976,487 – 11,976,596 |
Length | 109 |
Max. P | 0.898665 |
Location | 11,976,487 – 11,976,596 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.01 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -18.58 |
Energy contribution | -19.58 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11976487 109 - 22224390 UAAAAGAAAAAGAGAGACGAUUUUCAUGGCCUGCAAGCAAGUCGGAAGUAUCGAAAAUUUUCCGGACGGAUAUUGCAGAUUGGGUGUUCGAGUGGAAAUAAGUAA-----------AAAA .................((((((((.((((.((....)).)))))))).)))).....((((((..((((((((........))))))))..)))))).......-----------.... ( -22.40) >DroSec_CAF1 16321 113 - 1 UAAAAGAAA----GAGAACAUUUUCAUGGCCUGCAAGCAGGUCGGAAGCUUCGAAA-CUUUCCGAACGGAUAUUGCAGAUUGGGUGUUCGAGUGGAAAUAAGCAAAAAAC--GAAAAAAA .........----.......(((((.(((((((....)))))))...((((.....-.((((((..((((((((........))))))))..)))))).)))).......--)))))... ( -27.80) >DroSim_CAF1 16437 115 - 1 UAAAAGAAA----GAGAACAUUUUCAUGGCCUGCAGGCAGGUCGGAAGCUUCGAAA-CUUUCCGAACGGAUAUUGCAGAUUGGGUGUUCGAGUGGAAAUAGGCAAAAAAAAAAAAAAAAA .........----.........(((.(((((((....))))))))))((((.....-.((((((..((((((((........))))))))..)))))).))))................. ( -25.90) >DroEre_CAF1 15209 100 - 1 UAAAAGAAA----A-GCACAU----AUGGCCUGCCAGCAGGUAGAAAGCUUCCAAA-UUUUCCGAACGGAUAUUGCCGGUUGGGUGUUCGAGUGGAAACAAGCGAAAACA---------- ........(----(-((....----...(((((....))))).....)))).....-....((((.(((......))).))))((.((((..((....))..)))).)).---------- ( -28.00) >DroYak_CAF1 15881 106 - 1 UAAAAGAAA----AUGCACAUUUUCAUGGCCUGCAAGCAGG----AAGCGUAGAAA-UUUUCCGGACGGAUAUUGCAGAUUGGGUGUUCGAGUGGAAAUAAGCAAAAACU-----UUCCA ..((((...----.(((....(((((((.((((....))))----...))).))))-.((((((..((((((((........))))))))..))))))...)))....))-----))... ( -23.90) >consensus UAAAAGAAA____GAGAACAUUUUCAUGGCCUGCAAGCAGGUCGGAAGCUUCGAAA_UUUUCCGAACGGAUAUUGCAGAUUGGGUGUUCGAGUGGAAAUAAGCAAAAAAA______AAAA ..........................(((((((....)))))))..............((((((..((((((((........))))))))..))))))...................... (-18.58 = -19.58 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:58 2006