Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,971,198 – 11,971,297 |
Length | 99 |
Max. P | 0.992226 |
Location | 11,971,198 – 11,971,297 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.59 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -19.47 |
Energy contribution | -20.15 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.03 |
Mean z-score | -2.57 |
Structure conservation index | 0.83 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11971198 99 - 22224390 CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA-ACCCCAUCAUCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC ..((((((((.......(((((((((((((((((.((((.....-....))))..(((.......))).)))))))))))))))))..)))).))))... ( -23.30) >DroSec_CAF1 10867 96 - 1 CUCGGUGGCCUUUUGUUAAUGGUAAUCAUAAUGACGAUGCCAAA-ACCCCGU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGGUAACUGUGC ..((((.((((..((.((((((((((....((((.((((.(...-.....).---))))....))))....)))))))))).))....)))).))))... ( -21.70) >DroSim_CAF1 10551 96 - 1 CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA-ACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC ..((((((((...((.((((((((((((..((((.((((.....-.......---))))....))))..)))))))))))).))....)))).))))... ( -23.00) >DroEre_CAF1 10600 95 - 1 CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAA--ACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC ..((((((((.......(((((((((((((((((.((((....--....)))---)....(......).)))))))))))))))))..)))).))))... ( -23.50) >DroYak_CAF1 10491 96 - 1 CUCGUUGGC-UUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAAACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGCUAACUGUGC ...((((((-(......(((((((((((((((((.((((..........)))---)....(......).)))))))))))))))))..)))))))..... ( -25.80) >consensus CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA_ACCCCAU___CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC ..((((((((...((.((((((((((((..((((.((((................))))....))))..)))))))))))).))....)))).))))... (-19.47 = -20.15 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:56 2006