Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,969,736 – 11,969,851 |
Length | 115 |
Max. P | 0.534092 |
Location | 11,969,736 – 11,969,851 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -18.82 |
Energy contribution | -18.70 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.19 |
Structure conservation index | 0.87 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11969736 115 - 22224390 AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCACGGAAGUUGCAAAAACAACAGCAAAUGAG ....................((...((((((...((.((.......))(.....).......))..))))))....((((((((....))))))))..........))....... ( -22.10) >DroSec_CAF1 9096 110 - 1 AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUGUUUAGCGUUUUCUGGCACGCGAUUUCCGCGAAAGUUGCAAAAACAACAAAAA----- .......(((((((((...((....)).......((.((.......)).))....)))))))))(((((...(((((((.....)))).....))).)))))........----- ( -22.70) >DroSim_CAF1 9146 115 - 1 AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGAAAGUUGCAAAAACAACAGCAAUUGAG ....................((...(((((((..((.((.......)).))...........((((........)))).))))))).....((((......)))).))....... ( -21.70) >DroEre_CAF1 9297 115 - 1 AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGGAAGUUGCAAAAACAGCUGUAACUGAG ......(((((........(((....((((((..((.((.......)).))...........((((........)))).)))))))))..(((((......))))).)))))... ( -23.30) >DroYak_CAF1 9209 115 - 1 AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACACCGGCAAACAUUUUUAGCGUUUUCUGACACGCGAUUUCUGCGGAAGUUGCAAAAACAACAGCAACUGAG ....................((...((((((...((.((..........))(((....))).))..))))))....((((((((....))))))))..........))....... ( -18.20) >consensus AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGGAAGUUGCAAAAACAACAGCAACUGAG ....................(((...((((((..((.((.......)).))...........((((........)))).))))))((....)))))................... (-18.82 = -18.70 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:54 2006