Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,967,365 – 11,967,472 |
Length | 107 |
Max. P | 0.650892 |
Location | 11,967,365 – 11,967,472 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 96.73 |
Mean single sequence MFE | -35.86 |
Consensus MFE | -34.70 |
Energy contribution | -34.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.12 |
Structure conservation index | 0.97 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11967365 107 - 22224390 UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUGCUCAGGAAAAGUCAGUGGAAG .((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))............... ( -34.70) >DroSec_CAF1 6747 107 - 1 UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG .......(((.(((((((((..((((((....))))))..)))......)))...(((((((((..((.(......).))..))).)))))).....))).)))... ( -36.90) >DroSim_CAF1 6798 107 - 1 UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG .......(((.(((((((((..((((((....))))))..)))......)))...(((((((((..((.(......).))..))).)))))).....))).)))... ( -36.90) >DroEre_CAF1 6958 107 - 1 UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGAAGCAG .((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))....(.(....)).. ( -35.80) >DroYak_CAF1 7049 106 - 1 UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGGACCA- .(((((((..(((....(((..((((((....))))))..)))..))).)))...(((((((((..((.(......).))..))).))))))..........))))- ( -35.00) >consensus UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG .((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))............... (-34.70 = -34.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:51 2006