Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,966,678 – 11,966,777 |
Length | 99 |
Max. P | 0.558888 |
Location | 11,966,678 – 11,966,777 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.86 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -9.03 |
Energy contribution | -10.51 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.22 |
Mean z-score | -1.90 |
Structure conservation index | 0.38 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11966678 99 - 22224390 ----------UUUUCCC-UAAUCUGUCUUACAAAUUGUGUGUAA----------AGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUUCAAGCACAAUAUGCGAAAGUUUAGCAGCUGA ----------.......-((((.((..(((((.......)))))----------..)).))))..............((((((((((((...(((.....))))))))))..)))))... ( -19.70) >DroSec_CAF1 6116 119 - 1 UUAUUUCAACUUUUGCC-UAAUCUGUCUUGCGAAUUGGGUAUAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUCCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA .......((((((((((-((((.((.....)).)))))))....(((((((...((((((..............))))))((..........))..)))))))))))))).......... ( -23.74) >DroSim_CAF1 6109 119 - 1 UUAUUUCAACUUUUGCC-UAAUCUGUCUUGCGAAUUGUGUGCAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUCCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA .......(((((((((.-((...(((((((.(((..((.((((.(((((..(((((.............)))))))))))))))).))))))).))).)).))))))))).......... ( -26.82) >DroEre_CAF1 6287 120 - 1 UCAAUUUCACUUUUGCCUUAGUCUGCCCCACAAAUUGUGUGUAAGCAUAUUAAUAGCAUAUUAAAGGAGCUAAUUUUGCUGUAAUUCUUGAAGCACAAUAUACACGAGCUGAGCUGCUUA .............(((.(((((.(((..((((.....))))...))).)))))..))).....(((.((((...((((.((((....(((.....)))..))))))))...)))).))). ( -20.50) >DroYak_CAF1 6377 120 - 1 UUAAUUUAACUUUUGCUUUAAUCUGCCUUACAAAUUGUGUGUAAACAUAUUAAUAGCAAAUUAAAGCACCUACUUAAGCUGCAACUUUUGAAGCACGAUAUGCUCGGAUUUUGCUGCUGA .............(((((((((.(((.........(((((....)))))......))).)))))))))........(((.((((..(((((.(((.....))))))))..)))).))).. ( -29.26) >consensus UUAAUUCAACUUUUGCC_UAAUCUGUCUUACAAAUUGUGUGUAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUUCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA .........(((((((.......((.....)).(((((((.............(((((((..............)))))))...........)))))))..)))))))............ ( -9.03 = -10.51 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:51 2006