Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,961,964 – 11,962,076 |
Length | 112 |
Max. P | 0.536536 |
Location | 11,961,964 – 11,962,076 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -41.98 |
Consensus MFE | -27.36 |
Energy contribution | -28.00 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.73 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11961964 112 + 22224390 AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCA--CACUGGAUACGAUGGCUAAGAGCCGAAUGUGUUUGGCUUUUCGUGUCGU-GGCUAGGUGGCAAAA----AGCAA ....((((..((((......)-))).))))..((....(((.((--(.((((.(((((((.(.((((((((((....)))))))))).)))))))-).))))))))))...----.)).. ( -41.90) >DroSec_CAF1 1284 113 + 1 AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCACACACUGGAUACGAUGGCUAAGAGCCGAGUGUGUUUGGCUUCUCGUGUCGU-GGCUAGGUGGGC-AA----AGCAA .(((.((((.((((......)-)))..(((((((.(((((((......(..((((((.((((.....))))..))))))..).....))))).))-.)))))))))))-..----))).. ( -40.20) >DroSim_CAF1 1281 113 + 1 AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCACACACUGCAUACGAUGGCUAAGAGCCGAGUGUGUUUGGCUUUUCGUGUCGU-GGCUAGGUGGGC-AA----AGCAA .(((.((((.((((......)-)))..(((((((.(((((((.......)))))..((((.(.((((((((((....)))))))))).)))))))-.)))))))))))-..----))).. ( -40.10) >DroEre_CAF1 1849 112 + 1 AGUUGGCCCUGGAUGAGUUUGUCUUUGGCCCAGUGACAUGCGCAGA--ACAGAUACGAUGGCCAAGAGCCGA-CGCUUCUGGCCUUUCGUGUCGU-GGCUCGGCGGGC-AA---GUGCAA .(((((((..((((......))))..))))....))).(((((...--.(((((((((.(((((..(((...-.)))..)))))..))))))).)-)(((.....)))-..---))))). ( -47.00) >DroYak_CAF1 1813 117 + 1 AGUUGGCCGUUGCUGAGUUUUGUCUUGGCCUAGUGACAUGCGCAGAGUAUAGAUACAAUGGCUAUGAGCCGA--GUGUUUGGCUUUUCGUGUCGUUGGCUACGUUGGC-AAAGCGGGCAU ..........((((..((((((((.(((((...(((((((...(((((.(((((((..((((.....)))).--)))))))))))).)))))))..)))))....)))-))))).)))). ( -40.70) >consensus AGUUGGCCCUGGAUGAGUUUG_UCUUGGCCUAGUGACAUGCGCACACACUGGAUACGAUGGCUAAGAGCCGA_UGUGUUUGGCUUUUCGUGUCGU_GGCUAGGUGGGC_AA____AGCAA .....((((..............(((((((..(((.....)))........(((((((.(((((((.((.....)).)))))))..)))))))...))))))).))))............ (-27.36 = -28.00 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:49 2006