Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,960,964 – 11,961,081 |
Length | 117 |
Max. P | 0.516319 |
Location | 11,960,964 – 11,961,081 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -44.45 |
Consensus MFE | -33.51 |
Energy contribution | -34.70 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11960964 117 - 22224390 GACCAGGCUAAAACAAAGGACCCCACAAUGGCUGACAAUGGCAACUUGUCGAGGUUUUGGGGUUUCUGCGGG-GGUUCAUCGUGGGUUCCAUGAUGGCUUCGGGGAAAUUCCGGGGGC ....................((((.......(((((((.(....)))))).)).....(((((((((.((((-(..(((((((((...)))))))))))))).))))))))))))).. ( -44.70) >DroSec_CAF1 252 116 - 1 GCCCAGGCUAAAACAAAGGACCCC-CAAUGGCUGACAAUGGCAACUUGUCGAGGUUUUGGGGUUUCUGCGGG-GGUUCAUCGUGGGUUCCAUGAUGGCUUCGGGGAAAUUGCGGGGAC .(((..((.............(((-(((.(.(((((((.(....)))))).)).).))))))(((((.((((-(..(((((((((...)))))))))))))).)))))..)).))).. ( -46.20) >DroSim_CAF1 252 117 - 1 GCCCAGGCUAAAACAAAGGACCCCACAAUGGCUGACAAUGGCAACUUGUCGAGGUUUUGGGGUUUCUGCGGG-GGUUCAUCGUGGGUUCCAUGAUGGCUUCGGGGAAAUUCCGGGGGC ((((............((((((((.....)).((((((.(....))))))).))))))(((((((((.((((-(..(((((((((...)))))))))))))).)))))))))..)))) ( -47.60) >DroYak_CAF1 818 110 - 1 GCCCAGGCUAAAACUAAGGACCCCACAAUGGCUGACAAUGGCAACUUGUCGAGGUUUUGGGGUUUUUCCGGGGGGUUCAU--------UCAUGGUGGCUGCGGGGAAAUUCCGGCGGC ((((.((........((((((((((.(((..(.(((((.(....)))))))..))).))))))))))))...))))....--------........(((((.(((....))).))))) ( -39.30) >consensus GCCCAGGCUAAAACAAAGGACCCCACAAUGGCUGACAAUGGCAACUUGUCGAGGUUUUGGGGUUUCUGCGGG_GGUUCAUCGUGGGUUCCAUGAUGGCUUCGGGGAAAUUCCGGGGGC .....((((......(..(((((((.(((..(.(((((.(....)))))))..))).)))))))..)......))))(((((((.....)))))))(((((.(((....))).))))) (-33.51 = -34.70 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:44 2006