Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,956,278 – 11,956,376 |
Length | 98 |
Max. P | 0.916554 |
Location | 11,956,278 – 11,956,376 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 76.16 |
Mean single sequence MFE | -21.28 |
Consensus MFE | -12.69 |
Energy contribution | -12.81 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.14 |
Mean z-score | -2.08 |
Structure conservation index | 0.60 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11956278 98 + 22224390 AGCUUCUUUUU--UUCUGUUUUUUCUGUUUUUUUUUUUGUGUUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGCCUAAUGCCAACACAAAUC ...........--......................((((((((.......((((.....))))((((((...((((....)))))))))))))))))).. ( -21.50) >DroSec_CAF1 44667 81 + 1 AGCCGCUUGCUGCUUCUGUUU---------UUUUUUUU---UUACCC-AG--CUAGACAAAGUGGCAUUU--GGGCAUUAGCCUAAUGC--ACACAAAUC .(((((((.(((((...((..---------........---..))..-))--).))...)))))))((((--(.((((((...))))))--...))))). ( -20.50) >DroSim_CAF1 23409 88 + 1 AGCCGCUUGCU--UUCUGUUUUA-------UUUUUUUU---UUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGUCUAAUGCCAACACAAAUC .(((((((.((--.((((.....-------........---......))))...))...)))))))..((((.(((((((...)))))))....)))).. ( -21.51) >DroEre_CAF1 24004 74 + 1 AGCCGCUUGCU--U---------------------UUU---UCGCCCCAGGCUUAGACAAAGUGGCAUUUGGGGGUAUUAGCCUAAUGCCAACGCAAAUC .(((((((...--.---------------------(((---..(((...)))..)))..)))))))(((((.((((((((...)))))))..).))))). ( -21.60) >consensus AGCCGCUUGCU__UUCUGUUU_________UUUUUUUU___UUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGCCUAAUGCCAACACAAAUC .(((((((...................................................))))))).......(((((((...))))))).......... (-12.69 = -12.81 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:43 2006