Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,956,101 – 11,956,201 |
Length | 100 |
Max. P | 0.974373 |
Location | 11,956,101 – 11,956,201 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -20.76 |
Consensus MFE | -17.84 |
Energy contribution | -17.20 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11956101 100 + 22224390 GUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCAGCCGACUGCAAUUUGACCAAUUCACUUUUGGUUUUUAAUUAAAAAAUAUGUUUGCUUAC ((.((((((((((((((....))))))))))....(((((....))))).((((.((((((.......))))))...))))........)))).)).... ( -23.70) >DroSec_CAF1 44490 100 + 1 GCCAACAAAACGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC (((((......((((((....)))))).........(((((((.....))....))))).........)))))........................... ( -19.90) >DroSim_CAF1 23232 100 + 1 GUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC ((.((((((((((((((....))))))))))....(((((....)))))........((((.......)))).................)))).)).... ( -20.90) >DroEre_CAF1 23827 100 + 1 GUCAACAAAACGCAUUCAACUGGAUGCAUUUCCUCCGGUCGGCCAGCUGCAAUUUGACCAAUUCGCUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAU ((.((((....((((((....)))))).............((((((..((((((.....)))).))..))))))...............)))).)).... ( -20.40) >DroYak_CAF1 22816 100 + 1 GUCAACAAAACGCAUUCAAUCGAAUGCAUUUCCUCUGGUCGGCCAACUGCAUUUCGACCAAUUCACUUUUCGCUUUUAAUUAAAAAAUAUGUUUGCUUAU ((.((((....((((((....))))))........(((((((...........))))))).............................)))).)).... ( -18.90) >consensus GUCAACAAAACGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC ((.((((....((((((....)))))).........(((((((.....))....)))))..............................)))).)).... (-17.84 = -17.20 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:42 2006