Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,339,078 – 1,339,217 |
Length | 139 |
Max. P | 0.999168 |
Location | 1,339,078 – 1,339,198 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.92 |
Mean single sequence MFE | -47.50 |
Consensus MFE | -39.70 |
Energy contribution | -41.46 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1339078 120 + 22224390 UGAAGGCAAUCACGGGGAUGUUCACGUAGCUGGCCUCCAUGAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGA ....(((.((((.((((..(((.....)))...)).)).))))..)))(((((((((........)))))))))(((((((((..((((((((.....))))))))..))).)))))).. ( -51.10) >DroGri_CAF1 16758 120 + 1 UGAACGCAAUAACGGGUAUGUUCACAUACGAUGCUUCCAUAAUUGGCUGAUGAUCGGUAUUGGGAUCGGUGACCACCAACAGACGAGGCUCGCGAAAAGCGGGCUGAAUCUGAUUGGUGA .((.(.(((((.((((((((....)))))....(..(((....)))..)....))).))))).).))(....)((((((((((...(((((((.....)))))))...)))).)))))). ( -42.60) >DroSec_CAF1 4933 120 + 1 UGAAGGCAAUCACGGGGAUGUUCACGUAGCUGGCCUCCAUGAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCAGGCUGGAUCUGGUUGGUGA ....(((.((((.((((..(((.....)))...)).)).))))..)))(((((((((........)))))))))(((((((((..((((..((.....))..))))..))).)))))).. ( -46.20) >DroEre_CAF1 5987 120 + 1 UGAAGGCAAUCACGGGGAUGUUCACGUAGCUGGCCUCCAUGAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGAGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGA ....(((.((((.((((..(((.....)))...)).)).))))..)))(((((((((........)))))))))(((((((((...(((((((.....)))))))...))).)))))).. ( -48.90) >DroYak_CAF1 4935 120 + 1 UGAAAGCGAUCACGGGGAUGUUCACGUAGCUGGCCUCCAUGAUGGGCUGGUGAUCGGUGUUGGGGUCAGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGA ......((((((((..(.....).))).((..((((.......))))..)))))))((((((....))).)))((((((((((..((((((((.....))))))))..))).))))))). ( -48.70) >consensus UGAAGGCAAUCACGGGGAUGUUCACGUAGCUGGCCUCCAUGAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGA ....(((.((((.((((..(((.....)))...)).)).))))..)))(((((((((........)))))))))(((((((((..((((((((.....))))))))..)))).))))).. (-39.70 = -41.46 + 1.76)
Location | 1,339,118 – 1,339,217 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -42.84 |
Consensus MFE | -38.12 |
Energy contribution | -38.08 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -2.36 |
Structure conservation index | 0.89 |
SVM decision value | 3.41 |
SVM RNA-class probability | 0.999168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1339118 99 + 22224390 GAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGAAGGCACCGGGCGUGAAGCG ..(((((((((((((((........)))))))))(((((((((..((((((((.....))))))))..))).))))))...))).))).((.....)). ( -46.60) >DroGri_CAF1 16798 99 + 1 AAUUGGCUGAUGAUCGGUAUUGGGAUCGGUGACCACCAACAGACGAGGCUCGCGAAAAGCGGGCUGAAUCUGAUUGGUGAACGCGCCGGGCGUAAAGCG ..(((((...(((((........)))))(((..((((((((((...(((((((.....)))))))...)))).))))))..))))))))((.....)). ( -40.90) >DroSec_CAF1 4973 99 + 1 GAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCAGGCUGGAUCUGGUUGGUGAAGGCACCGGGCGUGAAGCG ..(((((((((((((((........)))))))))(((((((((..((((..((.....))..))))..))).))))))...))).))).((.....)). ( -41.70) >DroEre_CAF1 6027 99 + 1 GAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGAGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGAAGGCACCGGGAGUGAAGCG ..(((((((((((((((........)))))))))(((((((((...(((((((.....)))))))...))).))))))...))).)))........... ( -42.70) >DroYak_CAF1 4975 99 + 1 GAUGGGCUGGUGAUCGGUGUUGGGGUCAGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGAAGGCACCGGGAGUGAAUCG (((...((((((.(((((((((....))).))))(((((((((..((((((((.....))))))))..))).))))))...))))))))......))). ( -42.30) >consensus GAUGGGCUGGUGAUCGGUGUUGGGGUCGGUCACCACCAGCAGACGCGGCUCGCGGAAAGCGGGCUGGAUCUGGUUGGUGAAGGCACCGGGCGUGAAGCG ......(((((((((........)))).(((..((((((((((..((((((((.....))))))))..)))).))))))..))))))))((.....)). (-38.12 = -38.08 + -0.04)
Location | 1,339,118 – 1,339,217 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -24.80 |
Energy contribution | -24.76 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -1.42 |
Structure conservation index | 0.87 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1339118 99 - 22224390 CGCUUCACGCCCGGUGCCUUCACCAACCAGAUCCAGCCCGCUUUCCGCGAGCCGCGUCUGCUGGUGGUGACCGACCCCAACACCGAUCACCAGCCCAUC .((.....))..((.((....((((..(((((.(.((.(((.....))).)).).))))).))))(((((.((..........)).))))).))))... ( -29.20) >DroGri_CAF1 16798 99 - 1 CGCUUUACGCCCGGCGCGUUCACCAAUCAGAUUCAGCCCGCUUUUCGCGAGCCUCGUCUGUUGGUGGUCACCGAUCCCAAUACCGAUCAUCAGCCAAUU .((.....))..(((..(..((((((.(((((...((.(((.....))).))...)))))))))))..)...((((........))))....))).... ( -31.00) >DroSec_CAF1 4973 99 - 1 CGCUUCACGCCCGGUGCCUUCACCAACCAGAUCCAGCCUGCUUUCCGCGAGCCGCGUCUGCUGGUGGUGACCGACCCCAACACCGAUCACCAGCCCAUC .((.....))..((.((....((((..(((((.(.((.(((.....))).)).).))))).))))(((((.((..........)).))))).))))... ( -27.40) >DroEre_CAF1 6027 99 - 1 CGCUUCACUCCCGGUGCCUUCACCAACCAGAUCCAGCCCGCUUUCCGCGAGCCUCGUCUGCUGGUGGUGACCGACCCCAACACCGAUCACCAGCCCAUC ............((.((....((((..(((((...((.(((.....))).))...))))).))))(((((.((..........)).))))).))))... ( -27.70) >DroYak_CAF1 4975 99 - 1 CGAUUCACUCCCGGUGCCUUCACCAACCAGAUCCAGCCCGCUUUCCGCGAGCCGCGUCUGCUGGUGGUGACUGACCCCAACACCGAUCACCAGCCCAUC ............((((...((((((..(((((.(.((.(((.....))).)).).))))).))))((((..((....)).)))))).))))........ ( -27.30) >consensus CGCUUCACGCCCGGUGCCUUCACCAACCAGAUCCAGCCCGCUUUCCGCGAGCCGCGUCUGCUGGUGGUGACCGACCCCAACACCGAUCACCAGCCCAUC ............(((......((((..(((((.(.((.(((.....))).)).).))))).))))(((((.((..........)).))))).))).... (-24.80 = -24.76 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:56 2006