Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,955,212 – 11,955,317 |
Length | 105 |
Max. P | 0.645077 |
Location | 11,955,212 – 11,955,317 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.77 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -17.81 |
Energy contribution | -17.21 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.22 |
Mean z-score | -1.97 |
Structure conservation index | 0.67 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11955212 105 + 22224390 CCACAAUUUGGUUUACCUUUUUGGCUCAACACAUUUUGGUUGC---------------UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC ..(((((((((....))...(((((....(((((((((((.((---------------....)).)))...(((...(.....)...)))....)))))))).....)))))))))))). ( -23.80) >DroSec_CAF1 43616 105 + 1 CCACAAUUUGGUUUACCUUUUUGGCUCCACACAAUUUGGCUGC---------------UCUGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC ..(((((((((....))...(((((..(((((.....(((.((---------------....)).)))...(((...(.....)...))).......))))).....)))))))))))). ( -24.50) >DroEre_CAF1 22931 105 + 1 CCACAAUUUGGCUUACCUUUUUGGCUCAACACAUUUUGGCUGU---------------UCCGGCAGCCUUAGAUUCUCAUCCCGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC ..(((((((((....))...(((((....((((((((((((((---------------....))))))...(((...(.....)...)))....)))))))).....)))))))))))). ( -26.80) >DroYak_CAF1 21962 105 + 1 CCACAAUUUGGCUUACCUUUUUGGCUCAACACAUUUUGGCUGC---------------UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC ..(((((((((....))...(((((....(((((((((((.((---------------....)).)))...(((...(.....)...)))....)))))))).....)))))))))))). ( -24.60) >DroAna_CAF1 18205 120 + 1 ACUCGCUUUCCUUUGGCUUUUUGGCUCAAUACAUUUUGGCUGCGGCUGCGGCCGGGGCUUCAGUUGCUUUUUAUCCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC ....(((.......)))((((((((....(((((((((((.(((((((.(((....))).)))))))................(.....))).))))))))).....))))))))..... ( -32.80) >consensus CCACAAUUUGGUUUACCUUUUUGGCUCAACACAUUUUGGCUGC_______________UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC .................((((((((....(((((((((((.((...................)).)))...............((.....))..)))))))).....))))))))..... (-17.81 = -17.21 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:40 2006