Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,954,324 – 11,954,424 |
Length | 100 |
Max. P | 0.605558 |
Location | 11,954,324 – 11,954,424 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.07 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -17.43 |
Energy contribution | -17.03 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11954324 100 + 22224390 -----U-CUCU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC -----.-....--................(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -22.50) >DroSec_CAF1 42739 100 + 1 -----U-CUCU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCUUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC -----.-....--.(((.(((.((.(((..((((.....(((((...(((((.....(((....)))...))))---)..)))))...--------..)-)))..))).))..))).))) ( -23.10) >DroEre_CAF1 21718 101 + 1 -----UUCACU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCGCCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC -----..(((.--...)))..........(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -25.00) >DroYak_CAF1 21027 102 + 1 -----U-CUCUUGUGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC -----.-......................(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -22.50) >DroAna_CAF1 17288 117 + 1 GAAUGG-AUUU--UGUGUAUAUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUACACUCGCCGUGUGUGUUUCUGUUUGUUUGUCUGGUGAUUGACCCAC ((((((-(...--...........)))))))(((((...((((.....))))....(((((((..((..((((((((.....))))))).....)..))..))))))))))))....... ( -28.04) >consensus _____U_CUCU__UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG___UCACCGUGUGU________UUG_UUGUCUGGUGAUUGACCCAC .............................(((((((...((((.....))))....(((((((...............(((...)))..............))))))))))))))..... (-17.43 = -17.03 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:39 2006