Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,954,216 – 11,954,313 |
Length | 97 |
Max. P | 0.508273 |
Location | 11,954,216 – 11,954,313 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -18.10 |
Consensus MFE | -11.89 |
Energy contribution | -11.94 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.21 |
Structure conservation index | 0.66 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11954216 97 + 22224390 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACCCCCUCGCACCCUUCGU-------CC-----U----------- .....................((((((.....((((.......))))......))))))(((((.((((((.((.....))..)))))).))))-------).-----.----------- ( -20.40) >DroSec_CAF1 42618 107 + 1 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACACCC-CGUACCCUUCGC-------CC-----CACCCCUCUGCC ................................(((..........((((((........))))))(((((..(((((....-.)))))...)))-------))-----........))). ( -20.10) >DroSim_CAF1 21670 107 + 1 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACACCC-CGUACCCUUCGC-------CC-----CGCCCCUCUGCC ................................(((..........((((((........))))))(((((..(((((....-.)))))...)))-------))-----........))). ( -20.10) >DroEre_CAF1 21607 99 + 1 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGGACCCCC-G--------CCC-------CC-----CGCCCCCCAUCC ..((((..........................)))).........(((((.......)))))((((((.((.(((......-.--------..)-------))-----.))..)))))). ( -18.77) >DroYak_CAF1 20923 92 + 1 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGUAGGGACCCCC-C--------UCU-------------------CUUGUCC ...((((((((..(((((...((((((.....((((.......))))......)))))))))))))))))))(((....))-)--------...-------------------....... ( -15.70) >DroAna_CAF1 17133 115 + 1 GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGCUGCUGA----CUC-UAUACCCUUCCUUUUCUGCCCAGCACAGCCCGUCUCUC ....((................((((...((((((..........(((((((((....))).))))))))))))----...-))))............(((...)))..))......... ( -13.50) >consensus GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACCCCC_CGUACCCUUCCC_______CC_____CGCCCCUCUGCC .............................((((((.......((..(((((........)))))..)))))))).............................................. (-11.89 = -11.94 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:38 2006