Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,951,895 – 11,952,008 |
Length | 113 |
Max. P | 0.592714 |
Location | 11,951,895 – 11,952,008 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.32 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -15.89 |
Energy contribution | -16.13 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11951895 113 + 22224390 UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCGCACAAAAAAAAGGGGCGGG------- (((((((.(....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).)))).....).)))))))..............------- ( -25.70) >DroSec_CAF1 40366 108 + 1 UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGGGGCGGG------- ((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----))...........------- ( -21.50) >DroEre_CAF1 19322 106 + 1 UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGGGGGC--------- ((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----)).........--------- ( -21.50) >DroYak_CAF1 18620 106 + 1 UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGAGGAG--------- ((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----)).........--------- ( -21.50) >DroAna_CAF1 14449 114 + 1 UUGUAAGCCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACU-UUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAACGGGGGUCGAGCUCUUG ((((..(((....(((((..((((((...........(((....))).))))-)).)))))((((.(((........))).)))).....)))))-----)).((((((.....)))))) ( -21.80) >consensus UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC_____AAAAAGGGGCGG________ (((((..((((.((((((.(((((((...........(((....))).))))))).))))))................))))..)))))............................... (-15.89 = -16.13 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:35 2006