Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,940,800 – 11,940,898 |
Length | 98 |
Max. P | 0.991214 |
Location | 11,940,800 – 11,940,898 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -20.00 |
Consensus MFE | -20.22 |
Energy contribution | -20.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.21 |
Structure conservation index | 1.01 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11940800 98 + 22224390 AAAAAAACAAAAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAA--AGAAAUGAAUAAAAUGAAAUCAAACCGCUCUCGGCGCUUCUC ....................(((((..((..(((((((.((((......))))...--..............((....)))))))))..)).)))))... ( -20.00) >DroSec_CAF1 23871 90 + 1 ----------AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAAGAGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ----------..........(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... ( -20.00) >DroSim_CAF1 14566 90 + 1 ----------AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAAAAGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ----------..........(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... ( -20.00) >consensus __________AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAA_AGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ....................(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... (-20.22 = -20.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:25 2006