Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,338,539 – 1,338,647 |
Length | 108 |
Max. P | 0.657788 |
Location | 1,338,539 – 1,338,647 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 70.58 |
Mean single sequence MFE | -17.77 |
Consensus MFE | -8.92 |
Energy contribution | -9.08 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.50 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1338539 108 - 22224390 AACGGCAUAAAUAAACAGC--UGUUUAUAUCUAAACACCUCGUUUUUUUUUUCU---GCAUAGCGUAGCCCAAUAUCACGUGCUUCCACCUUAUUAUGCACGAUAUAUUUACU ...(((..(((.((((((.--((((((....)))))).)).)))).)))....(---((.....)))))).(((((..(((((..............)))))..))))).... ( -17.54) >DroSec_CAF1 4410 99 - 1 AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUCCA-UUU---GCAUAGCGUAGUCUUGUAUCACGUGCU----------UAUGCACGAUUUAUUUACU .......((((((((..(((.(((..((....((((((...))))))..)-)..---))).)))..............(((((.----------...))))).)))))))).. ( -19.90) >DroSim_CAF1 728 99 - 1 AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUCCA-UUU---GCAUAGCGUAGUCUUGUAUCACGUGCU----------UAUGCACGAUUUAUUUACU .......((((((((..(((.(((..((....((((((...))))))..)-)..---))).)))..............(((((.----------...))))).)))))))).. ( -19.90) >DroEre_CAF1 5462 91 - 1 CACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAGCUCCUCGUGUUUUCA-UUUUUA---------------UUACCACGUGCUUUCACCCUACCAUGCACGAUAUC------ ..((((((..(((((((....)))))))....((((....((((......-......---------------....)))).))))..........)))).)).....------ ( -15.59) >DroYak_CAF1 4405 96 - 1 CACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAGCACCUAUUGUUUUCA-UUUUCUGCAUACCGUAGUGC-AUACCACGUGCUUUCACCUCACGAUG--------------- ...(((((..(((((((....)))))))......((((.(((.((...((-.....))...)).)))))))-.......)))))..............--------------- ( -15.90) >consensus AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUUCA_UUU___GCAUAGCGUAGUCC_AUAUCACGUGCUU_CACC__A_UAUGCACGAUAUAUUUACU ...(((((..(((((((....)))))))....(((((.....)))))................................)))))............................. ( -8.92 = -9.08 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006