Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,935,169 – 11,935,260 |
Length | 91 |
Max. P | 0.957229 |
Location | 11,935,169 – 11,935,260 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 71.96 |
Mean single sequence MFE | -21.33 |
Consensus MFE | -13.51 |
Energy contribution | -13.32 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.63 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11935169 91 + 22224390 CGAAGGCUGCUGCAACAGCAGCGGCCACAAAAAAAGUAAAAGGUCAUAAAAAU-------------------UUGAUUUUUUUUCAUAUUUAAACACCAAAAGCUAU----GCA .((((((((((((....)))))))))...........(((((((((.......-------------------.))))))))))))......................----... ( -25.20) >DroSec_CAF1 18340 92 + 1 CGAAGGCUGGUGCAACAGCAGCGGCCACAAAAAA-G-GGAACGUCAAUAAAAU-------------------UUAAAUUCUAUGCAUAUUUAAACAC-AGAAGUUACAUACGUA ....(((((.(((....))).)))))........-.-...((((.......((-------------------.(((.((((.((..........)).-)))).))).)))))). ( -16.51) >DroSim_CAF1 9037 94 + 1 CGAAGGCUGGUGCAACAGCAGCGGCCACAAAAAAAGGGAAAGGCCAUUACAAU-------------------UUAAAUUUUAUGCAUAUUUAAACAC-AGAAGUUACAUACGUA ....(((((.(((....))).)))))((.......((......)).......(-------------------((((((.........)))))))...-.............)). ( -16.50) >DroEre_CAF1 3041 113 + 1 CGGCGGCUGGUGCAACAGCAGCGGUCACAAAAGUGGGAAAAGGUCAUUCAAAUGAAGUUUUUUCUUUUCUGUUUUUUUUUUUUGCAUAUUUAAGCAC-AAAUGUAACAGUUGUA .(((.((((.((...)).)))).)))((((....(..((((..((((....))))..))))..)....(((((.....(((.(((........))).-)))...))))))))). ( -27.10) >consensus CGAAGGCUGGUGCAACAGCAGCGGCCACAAAAAAAGGAAAAGGUCAUUAAAAU___________________UUAAAUUUUAUGCAUAUUUAAACAC_AAAAGUUACAUACGUA ....(((((.(((....))).)))))........................................................................................ (-13.51 = -13.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:18 2006