Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,930,999 – 11,931,091 |
Length | 92 |
Max. P | 0.761326 |
Location | 11,930,999 – 11,931,091 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -16.11 |
Energy contribution | -16.00 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.42 |
Structure conservation index | 0.53 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11930999 92 - 22224390 UGGCAGG--------------------CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU--GGCCGUCUCG-UUUUUACGACGC----- .((((((--------------------..(((..(((((((((((.(((((....))))).)).....)))))))))...)))..)))..--.)))((.(((-(....)))).))----- ( -27.50) >DroVir_CAF1 18730 120 - 1 CGACGGGCGUGGUGGAGGGGAUGGUUUACUCGUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUUUUGGCCGCAACGAUUUUUACGAUGCCUCCG ....((((((((((((((((((.(.......((.(((((((((((.(((((....))))).)).....))))))))).))).)))))))))..)))))..((.......))..))))... ( -36.21) >DroSec_CAF1 14243 91 - 1 UGGCAGG--------------------CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU---GCCGUCUCG-UUUUUACGACGC----- .((((((--------------------..(((..(((((((((((.(((((....))))).)).....)))))))))...)))..))..)---)))((.(((-(....)))).))----- ( -27.90) >consensus UGGCAGG____________________CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU__GGCCGUCUCG_UUUUUACGACGC_____ .............................(((..(((((((((((.(((((....))))).)).....)))))))))...))).............((.(((.......))).))..... (-16.11 = -16.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006