Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,928,202 – 11,928,373 |
Length | 171 |
Max. P | 0.786407 |
Location | 11,928,202 – 11,928,293 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -17.00 |
Consensus MFE | -17.00 |
Energy contribution | -17.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 1.00 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11928202 91 + 22224390 GAUGACAUCGUCGACACUUUCAGUUUUUUAACUCAAUUUUCAAUAAAAACAGUGCAGGAAACUUUUCCUCGCUGCCUCACUUUGUUGUUAA ((..(((..((.((.......((((....))))................(((((.(((((....))))))))))..))))..)))..)).. ( -17.00) >DroSec_CAF1 11412 91 + 1 GAUGACAUCGUCGACACUUUCAGUUUUUUAACUCAAUUUUCAAUAAAAACAGUGCAGGAAACUUUUCCUCGCUGCCUCACUUUGUUGUUAA ((..(((..((.((.......((((....))))................(((((.(((((....))))))))))..))))..)))..)).. ( -17.00) >DroSim_CAF1 2072 91 + 1 GAUGACAUCGUCGACACUUUCAGUUUUUUAACUCAAUUUUCAAUAAAAACAGUGCAGGAAACUUUUCCUCGCUGCCUCACUUUGUUGUUAA ((..(((..((.((.......((((....))))................(((((.(((((....))))))))))..))))..)))..)).. ( -17.00) >consensus GAUGACAUCGUCGACACUUUCAGUUUUUUAACUCAAUUUUCAAUAAAAACAGUGCAGGAAACUUUUCCUCGCUGCCUCACUUUGUUGUUAA ((..(((..((.((.......((((....))))................(((((.(((((....))))))))))..))))..)))..)).. (-17.00 = -17.00 + 0.00)
Location | 11,928,253 – 11,928,373 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.08 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -21.38 |
Energy contribution | -23.12 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.09 |
Mean z-score | -1.95 |
Structure conservation index | 0.70 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11928253 120 - 22224390 GCGGGCGGAAAGAGUUGGACAACAAUGAAAUGCUUUUAGCCUGCGAAACUGCCAACUGAACAGCGCCAAACGAAAUUAAGUUAACAACAAAGUGAGGCAGCGAGGAAAAGUUUCCUGCAC ((((((.(((((.((((.....))))......))))).)))))).....((((((((......((.....))......)))).((......))..))))((.(((((....))))))).. ( -32.10) >DroVir_CAF1 13454 108 - 1 CCAAGC--AACGAGUUGGACAACAAUGAAAUGCUUUUAGCAUC--GAGCUGCGAGCUGCGCAGCGCCAAGCGAAAUUAAGUUAACAACA--------CAGAAAAAAAAAGUUUUGUGCAC ..((((--(....((((.....))))....)))))(((((...--..((((((.....))))))((...))........)))))...((--------(((((........)))))))... ( -25.30) >DroSec_CAF1 11463 120 - 1 GCAGGCGGAAAGAGUUGGACAACAAUGAAAUGCUUUUAGCCUGCGAAACUGCCAACUGAACAGCGCCAAACGAAAUUAAGUUAACAACAAAGUGAGGCAGCGAGGAAAAGUUUCCUGCAC ((((((.(((((.((((.....))))......))))).)))))).....((((((((......((.....))......)))).((......))..))))((.(((((....))))))).. ( -32.80) >DroSim_CAF1 2123 120 - 1 GCAGGCGGAAAGAGUUGGACAACAAUGAAAUGCUUUUAGCCUGCGAAACUGCCAACUGAACAGCGCCAAACGAAAUUAAGUUAACAACAAAGUGAGGCAGCGAGGAAAAGUUUCCUGCAC ((((((.(((((.((((.....))))......))))).)))))).....((((((((......((.....))......)))).((......))..))))((.(((((....))))))).. ( -32.80) >consensus GCAGGCGGAAAGAGUUGGACAACAAUGAAAUGCUUUUAGCCUGCGAAACUGCCAACUGAACAGCGCCAAACGAAAUUAAGUUAACAACAAAGUGAGGCAGCGAGGAAAAGUUUCCUGCAC ((((((.(((((.((((.....))))......))))).))))))....(((((((((......((.....))......)))).((......))..)))))..(((((....))))).... (-21.38 = -23.12 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:16 2006