Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,923,898 – 11,924,004 |
Length | 106 |
Max. P | 0.998242 |
Location | 11,923,898 – 11,924,004 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -13.37 |
Energy contribution | -13.27 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -2.13 |
Structure conservation index | 0.69 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11923898 106 - 22224390 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA-UGGCUACAGCAGUAGCCACACAAGGAGCAAGAGCAGAAGCAGUAGCAUGAGGUCAAUCU------------- ........(((((...(((((.(((((..((....))..))))))))-))(((((.((.....((......)).((....))....)).))))))))))........------------- ( -20.70) >DroVir_CAF1 8753 111 - 1 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAAUUGGUUACAGAAGUAGCCA----ACGGUCCAGACCAGACCAA-----ACCAACCCAAUCUCUGACCAACAUCU ......................(((((..((....))..)))))...((((((((....)))))))----).((((.(((.........-----............)))))))....... ( -16.80) >DroSec_CAF1 5183 94 - 1 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA-UGGCUACAGCAGUAGCCACACAAGGAGCAGGAGCAGGA------------GCUCAAUCU------------- ........(((...........(((((..((....))..)))))...-(((((((....)))))))......)))...((((....------------)))).....------------- ( -20.70) >consensus AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA_UGGCUACAGCAGUAGCCACACAAGGAGCAAGAGCAGAA__A_____A__AGCUCAAUCU_____________ ....((..(((...........(((((..((....))..)))))....(((((((....)))))))............)))..))................................... (-13.37 = -13.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:14 2006