Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,922,518 – 11,922,629 |
Length | 111 |
Max. P | 0.883072 |
Location | 11,922,518 – 11,922,629 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -13.31 |
Consensus MFE | -13.25 |
Energy contribution | -13.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -0.56 |
Structure conservation index | 1.00 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11922518 111 + 22224390 UCCCACUCC---------CACUCCCAUCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU .........---------..............((((.......((((........((((.(((((((....)))..)))).)))).........((((....))))))))......)))) ( -13.22) >DroSim_CAF1 2733 102 + 1 ------------------CACGCCCACCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU ------------------..............((((.......((((........((((.(((((((....)))..)))).)))).........((((....))))))))......)))) ( -13.22) >DroYak_CAF1 2036 120 + 1 ACCCACUUGCAAUCCCCACCCACCCACCAUUCACUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGGAGCGAUUUUCAAACU ...........................................((((..(((...((((.(((((((....)))..)))).))))((....))........)))..)))).......... ( -13.50) >consensus _CCCACU___________CACACCCACCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU ...........................................((((........((((.(((((((....)))..)))).)))).........((((....)))))))).......... (-13.25 = -13.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:13 2006