Locus 4521

Sequence ID X_DroMel_CAF1
Location 11,919,771 – 11,919,880
Length 109
Max. P 0.778084
window7435

overview

Window 5

Location 11,919,771 – 11,919,880
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 68.56
Mean single sequence MFE -27.01
Consensus MFE -11.19
Energy contribution -11.82
Covariance contribution 0.63
Combinations/Pair 1.17
Mean z-score -2.25
Structure conservation index 0.41
SVM decision value 0.55
SVM RNA-class probability 0.778084
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11919771 109 - 22224390
---UUCGCUAAGAGAGUUACGUUCUCUCUUAUUUACUGGCUCUCUUUAGCAUCAAACAUCACUGUUGUCCUUGCUCUCUUCGG--------UGAGCGCAACAUACUGUUAUGUUGACAGA
---...(((((((((((((.((............)))))))))).)))))...........((((.......((((.(....)--------.)))).(((((((....))))))))))). ( -33.70)
>DroEre_CAF1 28210 109 - 1
---GUCACUAAGAGAGUUACUUUCUCCCUUAUUUACUGGCUCUCUUUCGCACUGAGCCGCACUGUUUUUCUUGCUCUCUUCGG--------AGAGCGCAACAGACUGUUAUUUUAGCAGA
---.....((((.(((.......))).))))......(((((...........)))))...(((((.....(((((((....)--------)))))).))))).((((((...)))))). ( -33.10)
>DroYak_CAF1 31274 109 - 1
---UUCAGUAAGAGAGUUACUUUCUCCCUUAUUUACUGGCUCUCUUUCGUACUAAGCAUCACUGUUAUAUUUGCUCUCUGCGG--------AGAGCGCAACAGACUGUUAUUUUAGCAGA
---....(.((((((((((.................)))))))))).).............(((((.....(((((((....)--------)))))).))))).((((((...)))))). ( -27.43)
>DroAna_CAF1 53242 111 - 1
CAACUCUCUUAGA-AGUUAUUAUAGCUCUUAAUGUAACGCUCUCACUCGU--------UUACUGUUAUCCUUGCCUUCUCUUUAGGGCCUAAGUGCUCUCUAAACUGUUAUCCUGGCCGA
..........(((-((.((..(((((....((((.............)))--------)....)))))...)).)))))......((((.....((..........))......)))).. ( -13.82)
>consensus
___UUCACUAAGAGAGUUACUUUCUCCCUUAUUUACUGGCUCUCUUUCGCACUAAGCAUCACUGUUAUCCUUGCUCUCUUCGG________AGAGCGCAACAGACUGUUAUUUUAGCAGA
...........((((((((.................))))))))............................((((................))))........((((((...)))))). (-11.19 = -11.82 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:11 2006