Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,335,240 – 1,335,336 |
Length | 96 |
Max. P | 0.828329 |
Location | 1,335,240 – 1,335,336 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -24.27 |
Consensus MFE | -20.66 |
Energy contribution | -20.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.37 |
Mean z-score | -1.41 |
Structure conservation index | 0.85 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1335240 96 - 22224390 GAACGCACUUUUUGAACUUAACGAACGGUGCUUACACUGAGCCCUCGAAGGGGGGUCAUUUGCAAAUGGUUUAUUACAUUGGAUUAAACAAUAUAU (((((((((.((((.......)))).)))))......(((.(((((....))))))))..........)))).....((((.......)))).... ( -23.00) >DroEre_CAF1 2327 96 - 1 GAAGGUACAUUUUAAACGUAACGAACGUUGCUUACAGUGGGCCCUCGAAAGAGUGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUU ..............(((((.....)))))((((.(((..(((.(((....))).)))..)))....(((((((......)))))))...))))... ( -22.50) >DroYak_CAF1 1225 96 - 1 GAAGGCACAUUUUGAACGCAACGGACUGUGCUUACAGUGGGCCCUCGAAAGAUGGCCAGAUGCAUAUCAUUUAUUACAUGAAGUGAAACAAGCUUU .(((((...........(((.(..(((((....))))).((((.((....)).)))).).)))...((((((........)))))).....))))) ( -27.30) >consensus GAAGGCACAUUUUGAACGUAACGAACGGUGCUUACAGUGGGCCCUCGAAAGAGGGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUU ..(((((((.((((.......)))).))))))).((...(((((((....)))))))...))....(((((((......))))))).......... (-20.66 = -20.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:52 2006