Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,916,013 – 11,916,110 |
Length | 97 |
Max. P | 0.943730 |
Location | 11,916,013 – 11,916,110 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -27.02 |
Energy contribution | -26.80 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.19 |
Structure conservation index | 0.95 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11916013 97 + 22224390 AAUGCUGUGGUCAGCAUUGCUGCUCCACCUGCUCCGGCCGUUUUUGCAAAAAUAUGGAAACAUUUGGCACUAAUUGCAUGUGCUCAGCAGCAAUGUU ...((((....))))(((((((((.(((.(((....(((((....))......(((....)))..))).......))).)))...)))))))))... ( -32.20) >DroEre_CAF1 24507 97 + 1 AAUGCUGUGGUCAGCAUUGUUGCCCCACCUGCUUCCCCCGUUUUUGCAAAAAUAUGGAAACAUUUGGCACUAAUUGCAUGUGCUCAGCAGCAAUGUU ...((((....))))((((((((..(((.(((.......(((..(((......(((....)))...)))..))).))).)))....))))))))... ( -25.20) >DroYak_CAF1 27457 97 + 1 AAUGCUGUGGUCAGCAUUGCUGCCCCACCUGCUCCCUCCGUUUUUGCAAAAAUAUGGAAACAUUUGGCACUAAUUGCAUGUGCUCAGCAGCAAUGUU ...((((....))))((((((((..(((.(((.......(((..(((......(((....)))...)))..))).))).)))....))))))))... ( -27.60) >consensus AAUGCUGUGGUCAGCAUUGCUGCCCCACCUGCUCCCCCCGUUUUUGCAAAAAUAUGGAAACAUUUGGCACUAAUUGCAUGUGCUCAGCAGCAAUGUU ...((((....))))((((((((..(((.(((.......(((..(((......(((....)))...)))..))).))).)))....))))))))... (-27.02 = -26.80 + -0.22)
Location | 11,916,013 – 11,916,110 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -28.91 |
Energy contribution | -29.13 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.32 |
Structure conservation index | 0.96 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11916013 97 - 22224390 AACAUUGCUGCUGAGCACAUGCAAUUAGUGCCAAAUGUUUCCAUAUUUUUGCAAAAACGGCCGGAGCAGGUGGAGCAGCAAUGCUGACCACAGCAUU ...((((((((((.((((.........))))))......(((((.(((..((.......))..)))...)))))))))))))((((....))))... ( -29.20) >DroEre_CAF1 24507 97 - 1 AACAUUGCUGCUGAGCACAUGCAAUUAGUGCCAAAUGUUUCCAUAUUUUUGCAAAAACGGGGGAAGCAGGUGGGGCAACAAUGCUGACCACAGCAUU ....((((((((((((....))..))))).(((..(((((((...(.(((....))).)..)))))))..)))))))).(((((((....))))))) ( -28.90) >DroYak_CAF1 27457 97 - 1 AACAUUGCUGCUGAGCACAUGCAAUUAGUGCCAAAUGUUUCCAUAUUUUUGCAAAAACGGAGGGAGCAGGUGGGGCAGCAAUGCUGACCACAGCAUU ...(((((((((..((....))........(((..(((((((.....((((......)))))))))))..))))))))))))((((....))))... ( -32.30) >consensus AACAUUGCUGCUGAGCACAUGCAAUUAGUGCCAAAUGUUUCCAUAUUUUUGCAAAAACGGAGGGAGCAGGUGGGGCAGCAAUGCUGACCACAGCAUU ...(((((((((..((....))........(((..(((((((...(.(((....))).)..)))))))..))))))))))))((((....))))... (-28.91 = -29.13 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:09 2006