Locus 4517

Sequence ID X_DroMel_CAF1
Location 11,915,344 – 11,915,445
Length 101
Max. P 0.624412
window7430

overview

Window 0

Location 11,915,344 – 11,915,445
Length 101
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 82.75
Mean single sequence MFE -31.62
Consensus MFE -22.21
Energy contribution -22.77
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.70
SVM decision value 0.19
SVM RNA-class probability 0.624412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11915344 101 - 22224390
C----CCUUUGUUGGCAGGGUAUUUGUGAAAGUCAAAAUAUUCAAUGCCUUGCCGGCCAUGUCCGGCCGGAUAGAACAAAGUGGCAGGAGUGCAAGAAGUGGCAG----
(----((((((((((((((((((...((((.((....)).))))))))))))))((((......))))......))))))).))......(((........))).---- ( -34.80)
>DroSim_CAF1 23247 97 - 1
C----CCUU--UUGGCAGGGUAUUUG-GUAAGUCA-AAUAUUCAAUGCCUUGCCGGCCAUGUCCGGCCGGAUAGGACAAAGUGGCAGGAGUGCAAGAAGUGGCAG----
.----.(((--(((.(((((((((((-(....)))-)))))))..(((((..((((((......))))))..))).))...)).))))))(((........))).---- ( -35.10)
>DroEre_CAF1 23951 97 - 1
-----C-CU--UUGGCAGGGUAUCUGGGAAAGUCAAAAUAUUCAAUGCCUUGCCGGCCAUGUCCGGCCGGAUAGGACAAAGUGGCAGGAGUGCGAGGAGUGGCAG----
-----(-((--.(((((((((((....(((.((....)).))).)))))))))))(((((((((.........)))))...)))))))..(((........))).---- ( -31.90)
>DroYak_CAF1 26881 97 - 1
-----C-UU--UUGGCAGGGUAUUCGGGAAUGUCAAAAUAUUCAAUGCCUUGCCGGUCAUGUCCGGCCGGAUAGGACAAAGUGGCAGGAGUGCAAAAAGUGGUAG----
-----(-((--(((((((((((((...((((((....))))))))))))))))).(((.(((((....))))).)))......(((....))).)))))......---- ( -32.10)
>DroAna_CAF1 47950 99 - 1
CCGUAU-UU--AUGAAAGGGUAUUUGGCAAAGUCAAAAUAUUCAAUGCCUUGCCGACCAUGUCCGGCCAAAAAGGACGAAGUGGCAGCA-------AAGUGGCAGAAGA
......-..--......(((((((((((...))).))))))))..((((((((.(.((((((((.........))))...))))).)))-------)...))))..... ( -24.20)
>consensus
C____C_UU__UUGGCAGGGUAUUUGGGAAAGUCAAAAUAUUCAAUGCCUUGCCGGCCAUGUCCGGCCGGAUAGGACAAAGUGGCAGGAGUGCAAGAAGUGGCAG____
............((((((((((((...................))))))))))))(((((.(((.((((............)))).))).........)))))...... (-22.21 = -22.77 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:07 2006