Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,913,886 – 11,913,986 |
Length | 100 |
Max. P | 0.846839 |
Location | 11,913,886 – 11,913,986 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -18.09 |
Consensus MFE | -11.11 |
Energy contribution | -12.00 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.11 |
Mean z-score | -1.77 |
Structure conservation index | 0.61 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11913886 100 - 22224390 AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUGCUUAAUAUUCAG-----ACUUUCGGAUACCCGCCAAUAGAAAU--------------- .(((((((....))).......(((((((....)).))))).......(((((((....((.....)).....)-----))))))))))................--------------- ( -19.10) >DroSec_CAF1 23746 94 - 1 AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAU------UAUUCAG-----ACUUUCGGAUACCCGCCAAUCGAAAU--------------- .(((((((....))).......(((((((....)).))))).......(((((((......------......)-----))))))))))................--------------- ( -19.50) >DroSim_CAF1 21711 100 - 1 AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUUGUCAAUAUUCAG-----ACUUUCGGAUACCCACCAAUCGAAAU--------------- .(((((((....))).......(((((((....)).))))).......(((((((..................)-----))))))))))................--------------- ( -19.07) >DroEre_CAF1 22048 95 - 1 AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGCUUAUGCCCUUUAUUCAG-----ACUUCCGGAUACCCGCCAA-----UU--------------- .(((((((....)))........(((.(((...(((((((..........)))))))...))).))).......-----......)))).........-----..--------------- ( -19.70) >DroYak_CAF1 25015 100 - 1 AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUCUUUCUGCUUAUUAUUCAG-----ACUUUCGGAUACCCGCCAAACCAAAU--------------- .(((((((....))).......(((((((....)).))))).......(((((((..................)-----))))))))))................--------------- ( -18.47) >DroAna_CAF1 45873 117 - 1 AACAGAGCCAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGAAGUUCCA---AAAAAUUCGAAUCCGGCUAAUAAAUACCUGAACAUAAAAAUAGGUUAAAAUAUUUA .....((((.............(((((((....)).)))))...........(((......---.....)))......)))).......(((((..........)))))........... ( -12.70) >consensus AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUGCUCAAUAUUCAG_____ACUUUCGGAUACCCGCCAAUCGAAAU_______________ .(((((((....))).......(((((((....)).))))).......(((((...........................)))))))))............................... (-11.11 = -12.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006