Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,910,819 – 11,910,934 |
Length | 115 |
Max. P | 0.886477 |
Location | 11,910,819 – 11,910,934 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.59 |
Mean single sequence MFE | -17.53 |
Consensus MFE | -8.19 |
Energy contribution | -9.31 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.24 |
Mean z-score | -2.01 |
Structure conservation index | 0.47 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11910819 115 + 22224390 UUCACGAUUCAGGAUUCC--CCAUUUUACUACCAAUACUCCAAAGACCAACAAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUACAAAAUGAUCACAACAGGGAAUAAAACACAAA ......((((.(((((((--....((((.(((((......................))))).))))..)))))))...((((.........))))........)))).......... ( -15.75) >DroSec_CAF1 20880 102 + 1 UU-------CAGCAUUCC--CCAUUUUAUUACUAUCACU------ACUAUUCAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGAAAUAAAACAAAAC ((-------((..(((((--....(((((((((((....------..........)))))))))))..))))).....((((((....)).))))......))))............ ( -17.04) >DroSim_CAF1 18726 102 + 1 UU-------CAGCAUUCC--CCAUUUUAUUACUAUCACU------ACUAUUCAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGGCAUAAAACAAAAC ..-------..(((((((--....(((((((((((....------..........)))))))))))..))))).....((((((....)).))))........))............ ( -17.74) >DroEre_CAF1 19115 104 + 1 UU-------CAGCCUGCC--CCAUUUUGUGCCCACUGCUUCAAAUAC----CAAAGUGCUAAUAAAUCGGCAUUUUUAGAUCUUGAGAAAGUAUCACAACGCGGAAUAAAACAAUAA ..-------....((((.--.....(((((...(((..(((((((..----.((((((((........))))))))...)).)))))..)))..))))).))))............. ( -17.90) >DroYak_CAF1 21957 105 + 1 UU-------UAGCUUUCCCCCCUUUUUUUGUCUGCCACUUCAAAGAC----CACAGUGGCAAUAAAUCGG-AGUUUAAGAUCUUGAAAAAUGAUCACAACAUGGAAUAAAAUAAUCA ..-------.....((((..((....(((((.(((((((........----...))))))))))))..))-.(((...((((((....)).))))..)))..))))........... ( -19.20) >consensus UU_______CAGCAUUCC__CCAUUUUAUUACUACCACU_CAAA_AC_A__CAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGGAAUAAAACAAAAA ....................((..(((((((((((....................)))))))))))..))........((((.........))))...................... ( -8.19 = -9.31 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006