Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,909,795 – 11,909,896 |
Length | 101 |
Max. P | 0.986784 |
Location | 11,909,795 – 11,909,896 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -31.71 |
Consensus MFE | -30.25 |
Energy contribution | -30.31 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.95 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11909795 101 + 22224390 ----GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA---- ----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91) >DroSec_CAF1 20228 101 + 1 ----GACUGUGGCAACGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA---- ----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91) >DroSim_CAF1 17734 101 + 1 ----GACUGUGGCAACGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA---- ----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91) >DroEre_CAF1 18165 101 + 1 ----GGCUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAGAGGACAGA---- ----((((.((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..))))))))...........---- ( -30.61) >DroYak_CAF1 20948 101 + 1 ----GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA---- ----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91) >DroAna_CAF1 40251 109 + 1 GGCGGGUGGCGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACGAAGGAC (((((((((((......))))))).)))).....(((((((((.............)))))((((....)).))..))))..(((...((..((....)).))...))) ( -32.02) >consensus ____GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA____ ......(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....))))))..... (-30.25 = -30.31 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:56 2006