Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,902,069 – 11,902,175 |
Length | 106 |
Max. P | 0.820385 |
Location | 11,902,069 – 11,902,175 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -19.04 |
Energy contribution | -18.65 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.15 |
Mean z-score | -1.54 |
Structure conservation index | 0.91 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11902069 106 + 22224390 UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUGA (((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00) >DroVir_CAF1 7745 120 + 1 UCAUAAAGUUUUGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCACGAAAUAACUUCAACUUGUAUGCAAAUAAGUGGAAAAACAUUCAUACAUGG .(((...((((((((((((((..........(((((((...(((....)))...)))))))))))))))))))))...(((.((((((......)))))).)))............))). ( -25.80) >DroSim_CAF1 11527 106 + 1 UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUAA (((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00) >DroEre_CAF1 10319 106 + 1 UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCGCAAAUAA (((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00) >DroYak_CAF1 12754 106 + 1 UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUGA (((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00) >DroAna_CAF1 30362 105 + 1 UCAUAAAGUUUCGUGUUAU-AAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGGAAGAGCUUGCAUUUUAAUACGAAC--------------CUACAAAUGG ......((.(((((((((.-..(((((.((.(((((((...(((....)))...))))))).....((........)))).)))))))))))))).--------------))........ ( -20.30) >consensus UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU______________CCACAAAUGA .....((((((((((((((((..........(((((((...(((....)))...)))))))))))))))))))...))))........................................ (-19.04 = -18.65 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:55 2006