| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,901,815 – 11,901,924 |
| Length | 109 |
| Max. P | 0.997441 |
| Location | 11,901,815 – 11,901,924 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.93 |
| Mean single sequence MFE | -26.34 |
| Consensus MFE | -18.59 |
| Energy contribution | -19.15 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.71 |
| SVM decision value | 2.86 |
| SVM RNA-class probability | 0.997441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11901815 109 - 22224390 ACCCAAACCCAAAGCUGGAUAAAUUGCGCAAUGAAUCCGUUUUGGGUGAUGGUGAAAAGUCGGGUGCACACCAUCGAACCAAAAAAAAACCACCACACCCUACCUACC--C (((...(((((((((.((((..(((....)))..)))))))))))))...))).....((.(((((.............................))))).)).....--. ( -27.65) >DroSec_CAF1 12659 87 - 1 ACC------CCAAGCUGGAUAAAUUACGCAAUGAAUCCGUU-UGGGUGAUGGUGA-AAGUCGGCUGCACACCAUCGAACCAAAA--------------CCCACCCACA--C ..(------((((((.((((..(((....)))..)))))))-))))((((((((.-.((....))...))))))))........--------------..........--. ( -25.90) >DroSim_CAF1 11294 87 - 1 ACC------CCAAGCUGGAUAAAUUGCGCAAUGAAUCCGUU-UGGGUGAUGGUGA-AAGUCGGCUGCACACCAUCGAACCAAAA--------------CCCACCCACA--C ..(------((((((.((((..(((....)))..)))))))-))))((((((((.-.((....))...))))))))........--------------..........--. ( -26.80) >DroEre_CAF1 10061 87 - 1 ACC------CCAAGCUGGAUAAAUUGCGCAAUGAAUCCAUUUUGGGUGAUGGUGAAAACUCGGGUGCACACCAUCCACCCA-----------------UCCACCCACACA- ..(------(((((.(((((..(((....)))..))))).)))))).(((((((...((....))...)))))))......-----------------............- ( -25.00) >consensus ACC______CCAAGCUGGAUAAAUUGCGCAAUGAAUCCGUU_UGGGUGAUGGUGA_AAGUCGGCUGCACACCAUCGAACCAAAA______________CCCACCCACA__C .........(((((.(((((..(((....)))..))))).)))))..(((((((...((....))...))))))).................................... (-18.59 = -19.15 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:54 2006