Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,898,006 – 11,898,126 |
Length | 120 |
Max. P | 0.844835 |
Location | 11,898,006 – 11,898,126 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -37.73 |
Consensus MFE | -33.94 |
Energy contribution | -33.83 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.95 |
Structure conservation index | 0.90 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11898006 120 + 22224390 GUAGCUCCCCUGGAUCAUCUGUUCUGGGACCAAAUCCGCCAGCUGGCUCAGUUGUACCAUCGAUUCCUGUACUUCCUGGCGGAGCUGGCUCUUGGCCUUGGCAUCCUCGACCAAACAUUC ..((((((((..((........))..)).........(((((..((..(((..((.......))..)))..))..)))))))))))(((.....)))(((((......).))))...... ( -37.60) >DroSec_CAF1 8809 120 + 1 GUAGCUCCCCUGGAUCAUCUGCUCCGGUACCAAAUCCGCCAGCUAGCCCAGUUGUACCAUCGAUUCCUGUACUUCCUGGCGGAUCUGGCUCUUGGCCUUGGCAUCCUCGACCGAACAUUC ((((.(((...)))....))))..((((.(((.(((((((((..((..(((..((.......))..)))..))..))))))))).)))......((....)).......))))....... ( -36.60) >DroSim_CAF1 8111 120 + 1 GUAGAUCCCCUGGAUCAUCUGCUCCGGUACCAAAUCCGCCAGCUAGCUCAGUUGUACCAUCGAUUCCUGUACUUCCUGGCGGAUCUGGCUCUUGGCCUUGGCAUCCUCGACCGAACAUUC ...(((((...)))))........((((.(((.(((((((((..((..(((..((.......))..)))..))..))))))))).)))......((....)).......))))....... ( -39.00) >consensus GUAGCUCCCCUGGAUCAUCUGCUCCGGUACCAAAUCCGCCAGCUAGCUCAGUUGUACCAUCGAUUCCUGUACUUCCUGGCGGAUCUGGCUCUUGGCCUUGGCAUCCUCGACCGAACAUUC ...........(((((....(((..((..(((.(((((((((..((..(((..((.......))..)))..))..))))))))).)))..)).)))....).)))).............. (-33.94 = -33.83 + -0.11)
Location | 11,898,006 – 11,898,126 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -44.47 |
Consensus MFE | -40.87 |
Energy contribution | -41.09 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -2.15 |
Structure conservation index | 0.92 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11898006 120 - 22224390 GAAUGUUUGGUCGAGGAUGCCAAGGCCAAGAGCCAGCUCCGCCAGGAAGUACAGGAAUCGAUGGUACAACUGAGCCAGCUGGCGGAUUUGGUCCCAGAACAGAUGAUCCAGGGGAGCUAC .....(((((((..((...))..)))))))....((((((.((.(((.((((...........))))..(((.(((....)))((((...)))).....)))....))).)))))))).. ( -37.90) >DroSec_CAF1 8809 120 - 1 GAAUGUUCGGUCGAGGAUGCCAAGGCCAAGAGCCAGAUCCGCCAGGAAGUACAGGAAUCGAUGGUACAACUGGGCUAGCUGGCGGAUUUGGUACCGGAGCAGAUGAUCCAGGGGAGCUAC ....((((((((..((...))..))))....((((((((((((((..((..(((...............)))..))..)))))))))))))).(((((........))).)).))))... ( -47.16) >DroSim_CAF1 8111 120 - 1 GAAUGUUCGGUCGAGGAUGCCAAGGCCAAGAGCCAGAUCCGCCAGGAAGUACAGGAAUCGAUGGUACAACUGAGCUAGCUGGCGGAUUUGGUACCGGAGCAGAUGAUCCAGGGGAUCUAC ...(((((((((..((...))..))))....((((((((((((((..(((.(((...............))).)))..))))))))))))))....)))))...(((((...)))))... ( -48.36) >consensus GAAUGUUCGGUCGAGGAUGCCAAGGCCAAGAGCCAGAUCCGCCAGGAAGUACAGGAAUCGAUGGUACAACUGAGCUAGCUGGCGGAUUUGGUACCGGAGCAGAUGAUCCAGGGGAGCUAC ...(((((((((..((...))..))))....((((((((((((((..(((.(((...............))).)))..))))))))))))))....))))).....(((...)))..... (-40.87 = -41.09 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006