Locus 4506

Sequence ID X_DroMel_CAF1
Location 11,894,292 – 11,894,399
Length 107
Max. P 0.782587
window7410

overview

Window 0

Location 11,894,292 – 11,894,399
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -42.60
Consensus MFE -34.26
Energy contribution -35.73
Covariance contribution 1.48
Combinations/Pair 1.31
Mean z-score -0.99
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.782587
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11894292 107 + 22224390
-------------UUCUUUCUAUCCCACAGUUGACCGCCCUGGUGGCCAGCCAUCAGGCGCAUGCCGCCGCCGUGGGAUUGAAGUGCGGUGGUAAGAGCGCCGUCUGCGUGGGACCACUC
-------------.........((((((.((.(((.....((((((....))))))(((((.((((((((((...........).)))))))))...)))))))).))))))))...... ( -48.20)
>DroSec_CAF1 4964 105 + 1
-------------UUC--UCUAUCCCACAGUUGACCGCCCUGGUGGCCAGCCAUCAGGCGCAUGCCGCCGCCGUGGGACUCAAGUGCGGUGGCAAGAGCGCCGUCUGCGCGGGACCACUC
-------------...--....((((..........((((((((((....)))))))).)).((((((((((.((.....)).).)))))))))...((((.....))))))))...... ( -48.60)
>DroSim_CAF1 5615 105 + 1
-------------UUC--UCUAUCCCACAGUUGACCGCCCUGGUGGCCAGCCAUCAGGCGCAUGCCGCCGCCGUGGGACUCAAGUGCGGUGGCAAGAGCGCCGUCUGCGUGGGACCACUC
-------------...--....((((((.((.(((.....((((((....))))))(((((.((((((((((.((.....)).).)))))))))...)))))))).))))))))...... ( -51.20)
>DroEre_CAF1 5168 107 + 1
-------------GCCUCUCUCUUCCACAGUUGACCGCCCUGGUGGCCAGGCAACAGGUGCACGCCGCCGCCGUGGGACUGAAGUGCGAGGGAAAGAGCGCCGUCUGCGUGGGACCACUC
-------------((((((.(((..(.((.((.(...((((((((((..(....).(((....)))))))))).)))..).)).)).)..))).)))).)).......(((....))).. ( -40.70)
>DroYak_CAF1 5611 104 + 1
----------------UUUUUUUCCCACAGUUGACAGCCCUGGUGGCCAGCCAAAAGGCGCAUGCUGCCGCCGUAGGACUCAAGUGCGGUGGCAAGAGCGCCNNNNNNNNNNNNNNNNNN
----------------.............((((...(((.....))))))).....(((((.(..((((((((((.........)))))))))).).))))).................. ( -30.10)
>DroAna_CAF1 20833 117 + 1
AUAUUCUACUCUAUUC--UCUCUU-UGCAGCUCACCUCUUUGGUGGCGAGACAUCAGGUGAACGCCGCUGCCGCAGGACUGAAGUGCAGUGGCAAGAGCGCCGUUUGUGUGGGACCACAC
...((((((.......--......-....((.((((.....))))))...(((...((((...((((((((..((....))....)))))))).....))))...)))))))))...... ( -36.80)
>consensus
_____________UUC__UCUAUCCCACAGUUGACCGCCCUGGUGGCCAGCCAUCAGGCGCAUGCCGCCGCCGUGGGACUCAAGUGCGGUGGCAAGAGCGCCGUCUGCGUGGGACCACUC
......................((((((.((((.((((....)))).)))).....(((((.((((((((((...........).)))))))))...)))))......))))))...... (-34.26 = -35.73 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:48 2006