Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,892,246 – 11,892,353 |
Length | 107 |
Max. P | 0.776407 |
Location | 11,892,246 – 11,892,353 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -13.38 |
Energy contribution | -15.02 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.08 |
Mean z-score | -1.58 |
Structure conservation index | 0.63 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11892246 107 - 22224390 CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUGUACACUGCAAUUAUAU--------UGAUAUCAUAAAUUCCU ..(((((((((....((((((....)).))))................((((((((((.--.....))))))))))...)))))))))....--------................. ( -21.50) >DroSec_CAF1 2789 115 - 1 CAAAUUGCGGUUUUCGUGAGUCUAGACAACACAAUACAUACAGGCAGCCAUAUAUUUGU--AUUAUCAAAUAUGUACACACUGCAAUUAUAUAGAAGAGCUGAUAUCAUGAAUUUAU ..(((((((((....(((.((((..................))))....(((((((((.--.....))))))))).))))))))))))............................. ( -19.37) >DroSim_CAF1 3606 115 - 1 CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUAUGGAAGAGCUGAUAUCAUGAAUUUAU ............(((((((((....)))............(((((..(((((((.((((--(.(((((....)).)))...))))).)))))))...)))))....))))))..... ( -22.30) >DroEre_CAF1 3267 102 - 1 CAAAUUGCGGUUUUCGCGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUGUGCAAAG-------------GUUCAU ..(((((((((.(..((((((...((.(((((((...(((..(....)..)))..))))--))).))..))))))..).)))))))))(((.((....-------------)).))) ( -19.30) >DroYak_CAF1 3589 99 - 1 CAAAGUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAU--------------AUCUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUUUGAAAAACCAGACAUCA--AAUCCAU ....(((.(((((....((((((.(..((((((......--------------...)))--))).(((((((((((.....))))..)))))))....).)))))).)--))))))) ( -16.90) >DroAna_CAF1 18928 117 - 1 CACAUUGCGGUUUUCGUGUGUCUAGACAACACAAUGAAUUCAGUUAGUCAUAUAUUUGUCCAUUAUCAAAUAUGUGUACACUGAGCGCAAAUAAAACACCUGACACCAAAGACUUCU ......(.((((((.(.(((((............((..((((((..((((((((((((........)))))))))).))))))))..))............)))))).)))))).). ( -27.35) >consensus CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU__AUUAUCAAAUAUGUAUACACUGCAAUUAUAUGAAAAA_CUGAUAUCAU_AAUUCAU ..(((((((((....((((((....)).)))).................(((((((((........)))))))))....)))))))))............................. (-13.38 = -15.02 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:47 2006