Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,887,902 – 11,888,009 |
Length | 107 |
Max. P | 0.868486 |
Location | 11,887,902 – 11,888,009 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.30 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -17.50 |
Energy contribution | -17.26 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.81 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11887902 107 - 22224390 CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCCUUGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ..........(((((...((................))..)))))(((((....))))).((((((((((....))..........))))))))............. ( -21.09) >DroSec_CAF1 19788 106 - 1 CACUUGCUCCUGCACACUGUUUUCAUUUCCUUCC-UGCUCGUGGACAUAUGUAAAUACGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ...((((((((((((.((((((.(((.....(((-.......)))...))).))))).).))))))..))))))................................. ( -22.20) >DroSim_CAF1 24195 106 - 1 CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCC-UGCUCGUGGACAUAUGUAAAUACGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ...((((...(((((...((..............-.))..))))).....))))......((((((((((....))..........))))))))............. ( -19.56) >DroEre_CAF1 21222 105 - 1 CACUUGGUCCGCCUCACUGUUUUCAUUUCCUUC--AGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ...(((((((((....(((.............)--))...))))))..............((((((((((....))..........))))))))...)))....... ( -23.22) >DroYak_CAF1 23895 103 - 1 CACUUGCUCCUGCUCACUGUUUUCAUUUCCUUC--AGCUCGUGGACA--UGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ...((((((.((((((((((((.(((.(((...--.......))).)--)).))))...)))).))))))))))................................. ( -22.60) >consensus CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCC_UGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC ....................................(((((((.((....))...)))))))((((((((....))..........))))))............... (-17.50 = -17.26 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:44 2006