Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,886,612 – 11,886,724 |
Length | 112 |
Max. P | 0.915933 |
Location | 11,886,612 – 11,886,724 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 89.88 |
Mean single sequence MFE | -40.87 |
Consensus MFE | -32.33 |
Energy contribution | -33.33 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.79 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11886612 112 + 22224390 -----UCGACAUCACCGGCGGCUGACGGACCAGAAAAUAAGCAUCCUGGCUCAUUCCACGACGCUCCUGGCCACUCCACCUGGCUUGUCCGACUGUUCACCGCCGCUGAUGUUGAUG -----(((((((((.((((((.((((((((.........(((.((.(((......))).)).)))...(((((.......))))).))))).....))))))))).))))))))).. ( -44.80) >DroSec_CAF1 18504 114 + 1 ACCACUCGACAUCACCGGCGGCUGACGGACCAGAAAAUAAGCAUCCUGGCUCAUUACGCGACGCUCCGGCACACUCCACCUGGCUUGUCGGACUGUUCACCGCCGCUGAUAGUG--- ..((((....((((.((((((.(((.(..((((............))))..)........(((.(((((((....((....))..))))))).)))))))))))).))))))))--- ( -37.60) >DroYak_CAF1 22591 112 + 1 -----UCGACAUCACCGGCGGCUGACGGACCAGAAAAUAAGCAUCCUGGCUCAUUCCACGACGCUCCUGGCCACUCCACCUGGCUUGUCCGACUGCUCACCGCCGCUGAUGCUGAUG -----(((.(((((.((((((.((((((((.........(((.((.(((......))).)).)))...(((((.......))))).))))).....))))))))).))))).))).. ( -40.20) >consensus _____UCGACAUCACCGGCGGCUGACGGACCAGAAAAUAAGCAUCCUGGCUCAUUCCACGACGCUCCUGGCCACUCCACCUGGCUUGUCCGACUGUUCACCGCCGCUGAUGCUGAUG .....(((.(((((.((((((.((((((.((((............))))..........((((..((.((........)).))..))))...))).))))))))).))))).))).. (-32.33 = -33.33 + 1.00)
Location | 11,886,612 – 11,886,724 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.88 |
Mean single sequence MFE | -50.57 |
Consensus MFE | -43.25 |
Energy contribution | -44.03 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.08 |
Mean z-score | -2.65 |
Structure conservation index | 0.86 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11886612 112 - 22224390 CAUCAACAUCAGCGGCGGUGAACAGUCGGACAAGCCAGGUGGAGUGGCCAGGAGCGUCGUGGAAUGAGCCAGGAUGCUUAUUUUCUGGUCCGUCAGCCGCCGGUGAUGUCGA----- ..((.((((((.(((((((.....(.(((((..((((.......))))((((((((((.(((......))).))))))).....)))))))).).))))))).)))))).))----- ( -53.50) >DroSec_CAF1 18504 114 - 1 ---CACUAUCAGCGGCGGUGAACAGUCCGACAAGCCAGGUGGAGUGUGCCGGAGCGUCGCGUAAUGAGCCAGGAUGCUUAUUUUCUGGUCCGUCAGCCGCCGGUGAUGUCGAGUGGU ---((((((((.(((((((..((..(((((((..((....))..)))..))))............(..((((((........))))))..)))..))))))).))))....)))).. ( -44.40) >DroYak_CAF1 22591 112 - 1 CAUCAGCAUCAGCGGCGGUGAGCAGUCGGACAAGCCAGGUGGAGUGGCCAGGAGCGUCGUGGAAUGAGCCAGGAUGCUUAUUUUCUGGUCCGUCAGCCGCCGGUGAUGUCGA----- ..((.((((((.(((((((.....(.(((((..((((.......))))((((((((((.(((......))).))))))).....)))))))).).))))))).)))))).))----- ( -53.80) >consensus CAUCAACAUCAGCGGCGGUGAACAGUCGGACAAGCCAGGUGGAGUGGCCAGGAGCGUCGUGGAAUGAGCCAGGAUGCUUAUUUUCUGGUCCGUCAGCCGCCGGUGAUGUCGA_____ ...(.((((((.(((((((..((.((((((((..((....))..)).....(((((((.(((......))).)))))))....))))).).))..))))))).)))))).)...... (-43.25 = -44.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:41 2006