Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,333,421 – 1,333,540 |
Length | 119 |
Max. P | 0.671925 |
Location | 1,333,421 – 1,333,540 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 92.16 |
Mean single sequence MFE | -54.93 |
Consensus MFE | -49.24 |
Energy contribution | -49.47 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.90 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1333421 119 - 22224390 AGCUGGCGCAAGCUUUGGCUGAAAGCUGAGCCUCGGAAAAGGGACUGCCUGUUGGCGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC .((.(((((.((((((.....))))))..(((.(((.....((.(((((....))))))).......(((((.(((((((((....)))))).))).))))))))))).)))).).)). ( -53.00) >DroSec_CAF1 9499 119 - 1 AGCUGGCGCAAGCUUUGGCUGAAAGCUGCGCCUCGGCAAAGGGACCGCCAGUUGACGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCAGGCAGCGCACCGCC .((.(((((..((((((((((..(((((((.(((......)))..)).)))))..))))))..))))(((((.(((((((((....)))))).))).))))).......)))).).)). ( -51.60) >DroYak_CAF1 8937 119 - 1 AGCUGGCACAAGCUUUGGCUGAAAGCUGUGCCUAGGUCGAAGGACCGCCAGUUGGCGGCCAAGGAGUCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC .((((.(.....(((((((((..(((((.((...((((....)))))))))))..))))))))).(.(((((.(((((((((....)))))).))).))))).).).))))........ ( -60.20) >consensus AGCUGGCGCAAGCUUUGGCUGAAAGCUGAGCCUCGGAAAAGGGACCGCCAGUUGGCGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC .((.(((((.((((((.....))))))..((((........((.(((((....))))))).....(.(((((.(((((((((....)))))).))).))))).))))).)))).).)). (-49.24 = -49.47 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:50 2006