Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 206,233 – 206,327 |
Length | 94 |
Max. P | 0.576213 |
Location | 206,233 – 206,327 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 73.14 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -16.24 |
Energy contribution | -18.18 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.20 |
Mean z-score | -1.67 |
Structure conservation index | 0.48 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 206233 94 - 22224390 CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAGCGCUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGAAGAAAUAUAU----GAAAAAUGUGUUCC .(((((..((((.(.((((((.(((((---(...((((.....)))).)))))).)))))).).))))...)))))(((((((----.....))))))).. ( -36.20) >DroPse_CAF1 998 101 - 1 CUCCUUGGCCGCCUGCUCUCCUGAGGCACCGUCCGACGAUGAGUGCUCCUCCUCAGCGGGAACUUCUGCAAGGAAUAACAACAGGAGUGAGUAUGAGUUGC .......((.(((((((((((((.(((((((((....)))).)))))..((((..(((((....))))).)))).......)))))..))))).).)).)) ( -32.30) >DroSec_CAF1 1305 89 - 1 CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAGCGCUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGAAGAAAUGGAU---------AUAUGAUUA .(((((..((((.(.((((((.(((((---(...((((.....)))).)))))).)))))).).))))...))))).......---------......... ( -33.70) >DroEre_CAF1 2017 98 - 1 CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAUCGAUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGGAGAAAUAAAUUGAUUAAAAAUUUGCUCC (((((((.((((.(.((((((((((((---((............))))))))...)))))).).)))))))))))...((((((.......)))))).... ( -35.60) >DroYak_CAF1 1259 98 - 1 CUCUUUGUCGGACUGCUCCGCGGUGGA---GUCCGGCGAUAAAUGCUCCUCCUCAGCAGGGGACUCUGUAAAGAUGAGUGGAUUGAUUAAGAAUGUGUUCA .((((.(((((.(..(((..(.(..((---((((((((.....))))...(((....)))))))))..)...)..)))..).))))).))))......... ( -30.30) >DroPer_CAF1 998 101 - 1 CUCCUUGGCCGCCUGCUCUCCGGAGGCACCGUCCGAUGAUGAGUGCUCCUCCUCAGCGGGAACUUCUGAAAGGAAUAACAACAGGAGUGAGUAUGGGUUGC ......((((.((((((....((((((((((((....)))).))))..))))..)))))).(((((((...(......)..))))))).......)))).. ( -32.80) >consensus CUCUUUGUCGGACUGCUCCGCGGAGGA___GUCCAGCGAUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGGAGAAAUAAAU_GA_UAAGAAUGUGUUCC .((((((.((((.(.((((((.(((((...(..((........))..).))))).)))))).).))))))))))........................... (-16.24 = -18.18 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:13 2006