Locus 4499

Sequence ID	X_DroMel_CAF1
Location	11,885,853 – 11,885,984
Length	131
Max. P	0.891303

overview

Window 0

Location	11,885,853 – 11,885,945
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	95.76
Mean single sequence MFE	-27.74
Consensus MFE	-22.02
Energy contribution	-23.26
Covariance contribution	1.24
Combinations/Pair	1.03
Mean z-score	-1.84
Structure conservation index	0.79
SVM decision value	0.40
SVM RNA-class probability	0.720409
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11885853 92 + 22224390
ACCAUCCAUGCCCUGGGUUCCAAGGAUCUGGGCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAA
.(((...((((((.(((((.....)))))))))))......)))((((.((((..(((((((((((....)))))).))))).)))))))). ( -30.40)
>DroSec_CAF1 17762 92 + 1
ACCAACCAUGUCCUGGGUUCCAAGGAUCUGGGCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAA
.((((..(((.((..((((.....))))..))))).....))))((((.((((..(((((((((((....)))))).))))).)))))))). ( -28.20)
>DroSim_CAF1 22341 92 + 1
ACCACCCAUGUCCUGGGUUCCAAGGAUCUGGGCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAA
.(((((((.(((((.(....).))))).)))).........)))((((.((((..(((((((((((....)))))).))))).)))))))). ( -28.90)
>DroEre_CAF1 19285 91 + 1
ACCACCCAUGUCCUGGGCUCCAAGGAUCUG-GCAUUCGCUUGGGUCUCUGUUUGCCGUGGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAA
....((((.(((((.(....).)))))..(-((....)))))))((((.((((..(((((((((((....)))))))).))).)))))))). ( -27.00)
>DroYak_CAF1 21967 91 + 1
ACCACCCAUGUCCUGGGCUCCAAGGAUCUG-GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGACAUAAUCAACGAAAACGAGAA
.....(((.(((((.(....).))))).))-)............((((.((((..(((((.((((....))))....))))).)))))))). ( -24.20)
>consensus
ACCACCCAUGUCCUGGGUUCCAAGGAUCUGGGCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAA
.(((...((((((.(((((.....)))))))))))......)))((((.((((..(((((((((((....)))))).))))).)))))))). (-22.02 = -23.26 +   1.24)

alignment

secondary structure

dotplot

Window 1

Location	11,885,884 – 11,885,984
Length	100
Sequences	5
Columns	101
Reading direction	forward
Mean pairwise identity	94.41
Mean single sequence MFE	-19.82
Consensus MFE	-15.80
Energy contribution	-16.04
Covariance contribution	0.24
Combinations/Pair	1.04
Mean z-score	-1.99
Structure conservation index	0.80
SVM decision value	0.97
SVM RNA-class probability	0.891303
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11885884 100 + 22224390
GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAAAA-AAAAUUGAAAGUAAGCAAGAAAUAAAUAAUAAAACAA
((.((((((((..((((.((((..(((((((((((....)))))).))))).))))))))...-)))).)))).))......................... ( -19.90)
>DroSec_CAF1 17793 101 + 1
GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAAAAAAAAAUUGAAAGUAAGCAAGAAAUAAAUAAUAAAACAA
((.((((((((..((((.((((..(((((((((((....)))))).))))).))))))))....)))).)))).))......................... ( -19.20)
>DroSim_CAF1 22372 99 + 1
GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAAA--AAAAUUGAAAGUAAGCAAGAAAUAAAUAAUAAAACAA
((.((((((((..((((.((((..(((((((((((....)))))).))))).))))))))..--)))).)))).))......................... ( -20.90)
>DroEre_CAF1 19315 97 + 1
GCAUUCGCUUGGGUCUCUGUUUGCCGUGGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAAAA---AA-UGAGAGUAGGCUAGAAAUAAAUAAUAAAACAA
((...(.((((..((((.((((..(((((((((((....)))))))).))).))))))))...---..-)))).)...))..................... ( -19.30)
>DroYak_CAF1 21997 98 + 1
GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGACAUAAUCAACGAAAACGAGAAAA---AAUUGAAAGUAAGCAAAAAAUAAAUAAUAAAACAA
((.((((.(((..((((.((((..(((((.((((....))))....))))).))))))))..)---)).)))).))......................... ( -19.80)
>consensus
GCAUUCGUUUUGGUCUCUGUUUGCCGUUGUUGUUUCGUGAAAUAAUCAACGAAAACGAGAAAA_AAAAUUGAAAGUAAGCAAGAAAUAAAUAAUAAAACAA
((.((((......((((.((((..(((((((((((....)))))).))))).)))))))).........)))).))......................... (-15.80 = -16.04 +   0.24)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:40 2006