Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,884,422 – 11,884,521 |
Length | 99 |
Max. P | 0.999333 |
Location | 11,884,422 – 11,884,521 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -29.42 |
Consensus MFE | -28.52 |
Energy contribution | -28.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.07 |
Structure conservation index | 0.97 |
SVM decision value | 3.52 |
SVM RNA-class probability | 0.999333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11884422 99 + 22224390 CUGACGCUCGGGGAAUUUUUCCUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCAGCGAUUUU----- ..((((..((((((.....))))))...))))(((((((...((((((....)))))).....))))))).......(((((.((...)))))))....----- ( -32.30) >DroSec_CAF1 16320 99 + 1 CUGACGCUCGGGGAAUUUUUCUUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCACCGAUUUC----- ..((((..((((((.....))))))...))))(((((((...((((((....)))))).....)))))))........(((.......)))........----- ( -26.80) >DroSim_CAF1 20877 99 + 1 CUGACGCUCGGGGAAUUUUUCCUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCACCGAUUUC----- ..((((..((((((.....))))))...))))(((((((...((((((....)))))).....)))))))........(((.......)))........----- ( -29.60) >DroEre_CAF1 17847 99 + 1 CUGACGCUCGGGGAAUUUUUCCUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCACCGAUUUC----- ..((((..((((((.....))))))...))))(((((((...((((((....)))))).....)))))))........(((.......)))........----- ( -29.60) >DroYak_CAF1 20781 104 + 1 CUGACGCUCGGGGAAUUUUCCCUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCACCGAUUUCUUUUC ..((((..((((((....)))).))...))))(((((((...((((((....)))))).....)))))))........(((.......)))............. ( -28.80) >consensus CUGACGCUCGGGGAAUUUUUCCUCGUUUUGUCUUUUCCUUGGUCGCGUGCGCGCGCGAAAAUUAGGAAAAUAUUGUUUUGCUUGCUUUGCACCGAUUUC_____ ..((((..((((((.....))))))...))))(((((((...((((((....)))))).....)))))))........(((.......)))............. (-28.52 = -28.56 + 0.04)
Location | 11,884,422 – 11,884,521 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -20.26 |
Energy contribution | -20.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.61 |
Structure conservation index | 0.89 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11884422 99 - 22224390 -----AAAAUCGCUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAGGAAAAAUUCCCCGAGCGUCAG -----......(((....)))..((.........(((((((.....(((((......)))))...))))))).......((.(((.....))).)).))..... ( -22.70) >DroSec_CAF1 16320 99 - 1 -----GAAAUCGGUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAAGAAAAAUUCCCCGAGCGUCAG -----((..(((((((.......)))........(((((((.....(((((......)))))...))))))).....................))))...)).. ( -21.30) >DroSim_CAF1 20877 99 - 1 -----GAAAUCGGUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAGGAAAAAUUCCCCGAGCGUCAG -----((..(((((((.......)))........(((((((.....(((((......)))))...)))))))..........(((.....)))))))...)).. ( -22.30) >DroEre_CAF1 17847 99 - 1 -----GAAAUCGGUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAGGAAAAAUUCCCCGAGCGUCAG -----((..(((((((.......)))........(((((((.....(((((......)))))...)))))))..........(((.....)))))))...)).. ( -22.30) >DroYak_CAF1 20781 104 - 1 GAAAAGAAAUCGGUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAGGGAAAAUUCCCCGAGCGUCAG ...........(..((..................(((((((.....(((((......)))))...))))))).......((.((((....)))))).))..).. ( -25.00) >consensus _____GAAAUCGGUGCAAAGCAAGCAAAACAAUAUUUUCCUAAUUUUCGCGCGCGCACGCGACCAAGGAAAAGACAAAACGAGGAAAAAUUCCCCGAGCGUCAG ...........(..((..................(((((((.....(((((......)))))...))))))).......((.((((...)))).)).))..).. (-20.26 = -20.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:38 2006