Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,876,395 – 11,876,497 |
Length | 102 |
Max. P | 0.884717 |
Location | 11,876,395 – 11,876,497 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -25.68 |
Energy contribution | -26.12 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.53 |
Structure conservation index | 0.90 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11876395 102 - 22224390 CAACAAGGACACUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU ...((..(((.(((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....))))).)))...))..... ( -23.84) >DroSec_CAF1 9588 102 - 1 CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU ...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... ( -28.74) >DroSim_CAF1 10734 102 - 1 CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU ...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... ( -28.74) >DroEre_CAF1 11554 102 - 1 CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGCGAAGCAAGUCGGAGUCAGAUGGAGAU ...((..(((((((((.....(((((((..((((((........(((.(((...))))))......)))))))))))))....)))))))))...))..... ( -32.64) >DroYak_CAF1 9860 102 - 1 CAACAUGGACGCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCACGCUGAGCGGGACAGGCGGAGCGAUUGCGAAGCAAGUCGUAGUCAGAUGGAGAU ...(((.(((..((((.....(((((((..((((((........(((.(((...))))))......)))))))))))))....))))..)))..)))..... ( -27.94) >consensus CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU ...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... (-25.68 = -26.12 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:22 2006