Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,332,162 – 1,332,266 |
Length | 104 |
Max. P | 0.691100 |
Location | 1,332,162 – 1,332,266 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 70.76 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -15.51 |
Energy contribution | -16.07 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.56 |
Structure conservation index | 0.57 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1332162 104 - 22224390 CGGGGCAGGGGCGGGGUUAGCCUUCCUAUGCUCCAGCCACUUUCCACUUUUCUACUGCCCCUUGUCAUCUCUCUCUGUUCUGCCGAGCGACAUACCGUUGGGCG .(((((((.(((((((((((.....))).))))).)))................)))))))....................(((.((((......)))).))). ( -36.13) >DroSec_CAF1 8271 93 - 1 CGGGGCAGGGGC------AGCCUUCCUGUGCUCCAGCCACUUUCCACUUUUCCACUGCCCCUUAUCAUCUCUCUCUGUUC-----AGCGACAUUCCGGUGGGCG .(((((((((((------((.....))))((....))..............)).)))))))...............((((-----(.((......)).))))). ( -29.10) >DroYak_CAF1 7729 80 - 1 CGGGGCAAGGGC------AUUCCUCCAGUGCUUCUGCCACUUUCUACUU-UCCACUACCCCUUAUCAUCUCGCUU--CUC-----UGCUGC----------ACG ...((((..(((------(((.....))))))..))))...........-.....................((..--...-----.))...----------... ( -16.30) >consensus CGGGGCAGGGGC______AGCCUUCCUGUGCUCCAGCCACUUUCCACUUUUCCACUGCCCCUUAUCAUCUCUCUCUGUUC_____AGCGACAU_CCG_UGGGCG .(((((((((((.......))))......((....)).................)))))))........................................... (-15.51 = -16.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:49 2006