Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,875,305 – 11,875,405 |
Length | 100 |
Max. P | 0.967774 |
Location | 11,875,305 – 11,875,405 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -22.41 |
Consensus MFE | -20.69 |
Energy contribution | -20.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.09 |
Structure conservation index | 0.92 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11875305 100 - 22224390 AAUUUGCAGUGAUCCCACUGCAGCCAAAUGUCUGAUUACCGCACACCAUCACCACCCCACCCGGCAGGAAACUUUUGGCAAACUCCGAAAUCGUGGCCAG ....(((((((....)))))))((((....((((((...........)))).........((((.((....)).))))........)).....))))... ( -22.70) >DroSec_CAF1 8563 88 - 1 AAUUUGCAGUGAUCCCACUGCAGCCAGAUCUCUGAUUCCCGCUC--------CACCCCCC----CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))(((((((.............((--------((......----.))))....(((((......)))))))).))))... ( -22.60) >DroSim_CAF1 8543 86 - 1 AAUUUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCGCUC--------C--CCCCC----CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))(((((((......((((.....--------.--.....----..))))...(((((......)))))))).))))... ( -21.92) >consensus AAUUUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCGCUC________CACCCCCC____CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))((((........................................(....)((((((......))))))...))))... (-20.69 = -20.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:20 2006