Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,873,582 – 11,873,677 |
Length | 95 |
Max. P | 0.599042 |
Location | 11,873,582 – 11,873,677 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 75.12 |
Mean single sequence MFE | -17.75 |
Consensus MFE | -1.19 |
Energy contribution | -1.19 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.33 |
Mean z-score | -1.35 |
Structure conservation index | 0.07 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11873582 95 - 22224390 UAAAUUUUCU-GGCA------AUAGCAUAAAUACAUUA---CGUG--CCAUAAU----UCAUCAUCGAAUUUUCGCAAUGCCUUGUUGAAU-----CAUU-UUCGCAACGGAACUUU ......((((-((((------...((.(((.....)))---.))(--(...(((----((......)))))...))..))))((((.(((.-----....-))))))).)))).... ( -12.80) >DroSec_CAF1 6738 98 - 1 UAAAUUUUCCAGGCG------AUAGCAUAAAUACAUUA---CGUGCGCCAUAAU----UCAUCAUCGAAUUUUCGCAUUGCCUUGUUCAAU-----AAUU-UUCGCAACGGAACUUU ......((((..(((------(..........(((...---.(((((....(((----((......)))))..))))).....))).....-----....-.))))...)))).... ( -18.95) >DroSim_CAF1 6696 102 - 1 UAAAUUUUCCAGGCAUAA---AUAGCAUAAAUACAUCA---CGUGCGCCAUAAU----UCAUCAUCGAAUUUUCGCAUUGCCUUGUUCAAU-----AAUUUUUCGCAACGGAACUUU ......(((((((((...---...((((..........---.))))((...(((----((......)))))...))..)))))(((..((.-----....))..)))..)))).... ( -16.70) >DroEre_CAF1 8583 96 - 1 UCAAUUU-CU-GACU-AAAACAU-----GAAUACAUUAUUUCAUG--UAAUGAU----UCAUCAUCGAAUUUUGC-AGUGCUUCGUUGAAU-----AAUU-UUCGCAACGGAACUUU .......-((-(...-...((((-----(((........))))))--)...(((----((......)))))...)-))...(((((((...-----....-....)))))))..... ( -15.50) >DroYak_CAF1 6893 108 - 1 UAAAUUU-CU-GCCU-AAAAUAUACUAUAAUUACAUUA---CGUG--UAAUAACUCACUCAUCAUCGAAUUUGGCGAAUGCCUCGUUGAAUUCGCGACAU-UUUGCAGCGGAACUUU .....((-((-((..-.............(((((((..---.)))--))))...............(((((..((((.....))))..)))))((((...-.)))).)))))).... ( -24.80) >consensus UAAAUUUUCU_GGCA_AA___AUAGCAUAAAUACAUUA___CGUG__CCAUAAU____UCAUCAUCGAAUUUUCGCAAUGCCUUGUUGAAU_____AAUU_UUCGCAACGGAACUUU ..................................................................................((((((.................))))))...... ( -1.19 = -1.19 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:16 2006