Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,864,607 – 11,864,711 |
Length | 104 |
Max. P | 0.594214 |
Location | 11,864,607 – 11,864,711 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -36.76 |
Consensus MFE | -28.63 |
Energy contribution | -28.05 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.39 |
Mean z-score | -1.73 |
Structure conservation index | 0.78 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11864607 104 + 22224390 UUGAAGAGAAGCUUGCUGCUCAAAUGGAAUGCCUGGAUGAUGGGCGAAUGAUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUUGAGGUGUCUGGAAUGGGUGG ...............(..((((..((((.(((((((((.((......)).))))......(((((((((....)))))))))...)))))))))...))))..) ( -35.40) >DroSec_CAF1 888 104 + 1 UGGAAGAGGAGCUUGCUGCUCAGAUGAAAUGCCUGGAUGAUUGGCGAGUGAUCCACGGACUGGGUGUUCAAUUGAGCGCCCAUUGAGGUGUCUGGAAUGGGUGG .....(((.((....)).))).........((((((((.(((....))).)))).((((((((((((((....))))))))).......)))))....)))).. ( -35.51) >DroSim_CAF1 891 104 + 1 UUGAAGAGGAGCUUGCUGCUCAGAUGGAAUGCCUGGAUGAUGGGCGAGUGAUCCACGGACUGGGUGCCCAAUUGGGUGCCCAUUGAGGUGUCUGGAAUGGGUGG ..........(((((((..(((..(((.....)))..)))..))))))).((((((((((((((..(((....)))..)))).......)))))...))))).. ( -37.41) >DroEre_CAF1 7742 104 + 1 UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCAGCGAUGAUGGGCGAGUGAUCUACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUGAAAUGGGUAG ...............(((((((..((((.(((.((........))..))).))))((((((((((((((....))))))))).......)))))...))))))) ( -33.21) >DroYak_CAF1 901 104 + 1 UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCCUUGAUGAUGGGCGAGUGCUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUAAAAUCGAUCA ........((((.....)))).(((.((.(((((.......)))))....(((((.....(((((((((....))))))))))))))..........)).))). ( -39.00) >DroAna_CAF1 2374 104 + 1 UUGAAGAGCAGCUCACUGCUGCGGUGGAAGGCCAGGACUACGGGUGAGUGAUCCUGGGACUGGGUGUUCAGCUGGGCACCCAUGGAGGUCUCUGUAGGAGUUUA .....(((...)))(((.((((((.(((...((((((.(((......))).))))))...(((((((((....)))))))))......))))))))).)))... ( -40.00) >consensus UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCCUGGAUGAUGGGCGAGUGAUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUGGAAUGGGUGG ........((((.....))))...((((.(((((((((.((......)).))))).....(((((((((....)))))))))....)))))))).......... (-28.63 = -28.05 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:12 2006