Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,862,929 – 11,863,049 |
Length | 120 |
Max. P | 0.637095 |
Location | 11,862,929 – 11,863,049 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -32.72 |
Energy contribution | -32.48 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.60 |
Structure conservation index | 0.80 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11862929 120 + 22224390 CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCCGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG ...(((((((((((.....)))).((((((......))..((((((((........))))))))....))))...)))))))(((((((......(((....)))......))))))).. ( -43.70) >DroSec_CAF1 13332 112 + 1 CACAUACA--------CUCGUGCAGCUGUCAAAAUCGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUACUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG ........--------.((((.(.((((((...((((...))))...))))))....((((((((((.......)))((((((.....)))))).....))))))).....).))))... ( -33.10) >DroSim_CAF1 13312 120 + 1 CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG .....((((((((((((...(((.((..((......))..((((((((........))))))))..))..)))..)))))))))))).....((.....))...((..(....)..)).. ( -43.50) >DroYak_CAF1 12848 120 + 1 CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCACAUGUUAUCAGUGCCAGCAACGCUGCGUGCUGCUCAUCUGACUAUCGAUAGUAACCAGGGCGAAAG .....((((((((((((...(((.(((((................))))).((((.((....))))))..)))..))))))))))))((.((((((((....))))...))))..))... ( -43.29) >consensus CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG ...............((((....(((((((...........(((((((........)))))))(((((((((...)))).)))))...............)))))))....))))..... (-32.72 = -32.48 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:11 2006