Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,862,371 – 11,862,469 |
Length | 98 |
Max. P | 0.623967 |
Location | 11,862,371 – 11,862,469 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.69 |
Mean single sequence MFE | -21.51 |
Consensus MFE | -16.30 |
Energy contribution | -16.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.623967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11862371 98 + 22224390 ---GACCGCUCGCUCUCCGAUUUUGCCGUAUU--GGAAUACAACAAACAAAAAAAAAAAACAACAAAAAAAUAAGAAGAGUGGGUGGCGCUUUGCGGAGGAUA ---..((((((((((((((((........)))--)))..........................(..........)..))))))))))(((...)))....... ( -20.20) >DroSec_CAF1 12807 87 + 1 CGCGACCGCUCGCUCUCCGAUUUUGCCCUAUUGUGGAAUACAACAAA------AAA--AACAACAA-AAAAUAAGAAGAGUGGGUGG-------CGGAGGAUA ..((.((((((((((((..(((((......((((.............------...--.))))...-)))))..).)))))))))))-------))....... ( -21.63) >DroSim_CAF1 12764 88 + 1 C--GACCGCUCGCUCUCCGAUUUUGCCGUAUUGUGGAAUACAACAAA------AAAACAACAACAAAAAAAUAAGAAGAGUGGGUGG-------CGGAGGAUA (--(.((((((((((((..(((((...((.((((.............------...))))..))...)))))..).)))))))))))-------))....... ( -22.69) >consensus C__GACCGCUCGCUCUCCGAUUUUGCCGUAUUGUGGAAUACAACAAA______AAAA_AACAACAAAAAAAUAAGAAGAGUGGGUGG_______CGGAGGAUA .....((((((((((((..(((((...........................................)))))..).)))))))))))................ (-16.30 = -16.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:10 2006