Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,860,079 – 11,860,199 |
Length | 120 |
Max. P | 0.704266 |
Location | 11,860,079 – 11,860,199 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -42.62 |
Consensus MFE | -35.70 |
Energy contribution | -34.98 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.26 |
Mean z-score | -1.90 |
Structure conservation index | 0.84 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11860079 120 - 22224390 AAGGCUGACGGACGUUGGUUUAAGUUCGACGACGAUGUGGUCUCCAGUUGCCGCAAACAGGAGGCGAUCGAACAGAACUACGGCGGCAUGGACGAUGAGAUCUCGUUUCAUGCCAAGUGC ...((((.....((((((.......)))))).((((...((((((.(((......))).)))))).))))..........))))(((((((((((.(....)))).))))))))...... ( -39.90) >DroVir_CAF1 14694 120 - 1 AAGGCCGAUGGUCGCUGGUUCAAAUUUGAUGACGAUGUGGUCUCCAGUUGCCGCAAACAGGAGGCCAUCGAGCAGAAUUAUGGCGGCAUGGAUGACGAGAUCUCGUUUCAUGCCAAAUGC ...((((....(((((...(((....)))...(((..((((((((.(((......))).)))))))))))))).))....))))((((((((..((((....))))))))))))...... ( -42.60) >DroPse_CAF1 10063 120 - 1 AAGGCCGAUGGGCGCUGGUUCAAGUUUGAUGACGAUGUGGUCUCCAGUUGCCGCAAACAGGAGGCCAUUGAGCUGAAUUAUGGCGGCAUGGAUGAUGAGAUCUCGUUCCAUGCCAAAUGC ...(((....)))(((((((((.(((..(........((((((((.(((......))).)))))))))..)))))))))..)))((((((((..((((....))))))))))))...... ( -45.90) >DroWil_CAF1 17991 120 - 1 AAAGCGGAUGGCCGUUGGUUUAAAUUCGAUGAUGAUGUGGUAUCCAGUUGCCGCAAACAGGAGGCCAUUGAACAAAACUAUGGCGGAAUGGAUGAUGAAAUCUCUUUUCAUGCCAAAUGC ...(((((((((((((((.......))))).....(((((((......))))))).......)))))))...........((((((((.(((.(((...)))))).))).)))))..))) ( -34.60) >DroAna_CAF1 16068 120 - 1 AAGGCCGACGGACGUUGGUUCAAGUUCGAUGACGAUGUGGUGUCCAGUUGCCGGAAACAGGAGGCCAUCGAACAGAACUACGGCGGCAUGGAUGAUGAGAUCUCGUUCCAUGCCAAGUGC ...((((..((((....)))).(((((.....(((..((((.(((.(((......))).))).)))))))....))))).))))((((((((..((((....))))))))))))...... ( -46.80) >DroPer_CAF1 10177 120 - 1 AAGGCCGAUGGGCGCUGGUUCAAGUUUGAUGACGAUGUGGUCUCCAGUUGCCGCAAACAGGAGGCCAUUGAGCUGAAUUAUGGCGGCAUGGAUGAUGAGAUCUCGUUCCAUGCCAAAUGC ...(((....)))(((((((((.(((..(........((((((((.(((......))).)))))))))..)))))))))..)))((((((((..((((....))))))))))))...... ( -45.90) >consensus AAGGCCGAUGGACGCUGGUUCAAGUUCGAUGACGAUGUGGUCUCCAGUUGCCGCAAACAGGAGGCCAUCGAACAGAACUAUGGCGGCAUGGAUGAUGAGAUCUCGUUCCAUGCCAAAUGC ...((((........((((((..((((((........((((((((.(((......))).)))))))))))))).))))))))))((((((((..((((....))))))))))))...... (-35.70 = -34.98 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:09 2006