Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,850,552 – 11,850,668 |
Length | 116 |
Max. P | 0.697594 |
Location | 11,850,552 – 11,850,668 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.66 |
Mean single sequence MFE | -42.12 |
Consensus MFE | -30.56 |
Energy contribution | -29.12 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.41 |
Mean z-score | -1.62 |
Structure conservation index | 0.73 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11850552 116 - 22224390 ----AACUACUCACUUGGGAUUAACCUUGUAGAUGGUGGCGCCAUUGAAGGUGGCCACAUACAGGUUGCCCUCGGUAUCGAUGGUCAGGCCAUCGGGCAGCAGAUGAUCCUUGGGACUAU ----.....((((...(((((((...(((((....((((((((......))).))))).)))))(((((((..(....)(((((.....))))))))))))...)))))))))))..... ( -44.50) >DroVir_CAF1 4577 115 - 1 -----UUAACAUACCUUGGAUUGACCUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUAGAUGUUGCCCUCGGUAUCAAUGGUCAUGCCAUCGGGCAGGAUAUGAUCCUUGGGACUGG -----....((..((..((((((..(((((...(((((((((((((((.((.(((.(((....))).)))..))...))))))))...))))))).)))))...))))))..))...)). ( -41.50) >DroPse_CAF1 614 119 - 1 CGC-AGGGACUUACUUUGGGUUAACCUUGAAGAUGGUGGCACCGUUAAAUGUGGCCACAUAGAGAUUACCCUCGGUGUCGAUGGUUAGACCGUCGGGCAGCAGAUGAUCCUUGGGGCUGG (.(-(((((........((((((.((........)))))).)).(((..(((.(((((((.(((......))).))))((((((.....))))))))).)))..))))))))).)..... ( -37.90) >DroGri_CAF1 4611 115 - 1 -----UUGGGAUACCUUGGGUUAACUUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUACAGAUUGCCCUCGGUGUCAAUGGUCAUGCCAUCGGGCAGUAGAUGAUCCUUGGGACUGG -----(..(....((..((((((.((((((...(((((((((((((((.((.(((............)))..))...))))))))...))))))).)))).)).))))))..))..)..) ( -39.10) >DroMoj_CAF1 7634 115 - 1 -----UUAACGUACUUGGGAUUGACUUUGUAGAUGGUGGAGCCAUUGAAUGUGGCCACAUAGAGGUUGCCCUCGGUGUCAAUGGUCAUGCCAUCGGGCAAGAUGUGAGUCUUGGGGCUGU -----...(((..((..(((((.(((((((.(((((((..((((((((.((((....))))((((....))))....))))))))..)))))))..)))))..)).)))))..))..))) ( -45.60) >DroAna_CAF1 5518 118 - 1 --CAGGAUACUCACUUGGGAUUCACCUUGUAGAUGGUGGCGCCGUUGAAGGUGGCCACGUAGAGAUUGCCCUCGGUGUCGAUGGUGAGGCCGUCGGGCAGGAGAUGGUCCUUGGGACUGG --.(((((.(((((.(((...(((((((...(((((.....))))).)))))))))).)).))).((((((.((((.(((....))).))))..))))))......)))))......... ( -44.10) >consensus _____UUAACUUACUUGGGAUUAACCUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUAGAGAUUGCCCUCGGUGUCAAUGGUCAGGCCAUCGGGCAGGAGAUGAUCCUUGGGACUGG .............((..((((((...((((.((((((...((((((((.((((....)))).....((((...))))))))))))...))))))..))))....))))))..))...... (-30.56 = -29.12 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:06 2006