Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,847,319 – 11,847,419 |
Length | 100 |
Max. P | 0.933852 |
Location | 11,847,319 – 11,847,419 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 72.59 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -14.25 |
Energy contribution | -14.37 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.55 |
Structure conservation index | 0.60 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11847319 100 + 22224390 AUAAGCAAUCCAUC-UCUUGGACCGUUCAGAU-------------UCGGACUUGAAUUUGGAUUCUGUCCAGUCAUGGUUCCCAGUACCAUGCCCAUGCCCAUGCCCAAUUCCA ....(((.......-..((((((.((((((((-------------(((....)))))))))))...)))))).((((((.......))))))....)))............... ( -24.50) >DroSec_CAF1 3173 91 + 1 AUAAGCAAUCCAUC---UUGGACCGUCCAGAU-------------UCGGAUUUGGACUUGGAUUCUGUCCAGUCAUGGCUCCCAAUCCCAUGCCCAUGCCCAAA------UCC- ...........(((---(.((.....))))))-------------..((((((((..((((((...)))))).((((((............).))))).)))))------)))- ( -22.50) >DroEre_CAF1 3460 102 + 1 AUAAGCAGUCCAUCAUCUUGGACC-UCAAGUUUCGGCACUCGUAAUCGGAUUUGGAUUUGGAUUCUGUCCAGUCAUGAUUCCCAAUCCCAAGCCCAAGUCCAG----------- .......(((((......))))).-......................((((((((..(((((((..(((.......)))....))).))))..))))))))..----------- ( -24.20) >consensus AUAAGCAAUCCAUC_UCUUGGACCGUCCAGAU_____________UCGGAUUUGGAUUUGGAUUCUGUCCAGUCAUGGUUCCCAAUCCCAUGCCCAUGCCCAA_______UCC_ ....((..((((......)))).........................((....(((((.(((.((((......)).)).))).)))))....))...))............... (-14.25 = -14.37 + 0.12)
Location | 11,847,319 – 11,847,419 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 72.59 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -19.67 |
Energy contribution | -18.90 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.21 |
Mean z-score | -1.58 |
Structure conservation index | 0.66 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11847319 100 - 22224390 UGGAAUUGGGCAUGGGCAUGGGCAUGGUACUGGGAACCAUGACUGGACAGAAUCCAAAUUCAAGUCCGA-------------AUCUGAACGGUCCAAGA-GAUGGAUUGCUUAU .(((.((((((.((((..((((((((((.......)))))).((....))..))))..)))).))))))-------------.)))...(((((((...-..)))))))..... ( -29.00) >DroSec_CAF1 3173 91 - 1 -GGA------UUUGGGCAUGGGCAUGGGAUUGGGAGCCAUGACUGGACAGAAUCCAAGUCCAAAUCCGA-------------AUCUGGACGGUCCAA---GAUGGAUUGCUUAU -(((------((((((..(((((...(((((..(..(((....))).)..)))))..)))))..)))))-------------))))((.((((((..---...))))))))... ( -32.40) >DroEre_CAF1 3460 102 - 1 -----------CUGGACUUGGGCUUGGGAUUGGGAAUCAUGACUGGACAGAAUCCAAAUCCAAAUCCGAUUACGAGUGCCGAAACUUGA-GGUCCAAGAUGAUGGACUGCUUAU -----------.....(((((((((.(((((.(((.((.((......)))).))).)))))...........(((((......))))))-))))))))................ ( -28.10) >consensus _GGA_______AUGGGCAUGGGCAUGGGAUUGGGAACCAUGACUGGACAGAAUCCAAAUCCAAAUCCGA_____________AUCUGGACGGUCCAAGA_GAUGGAUUGCUUAU ............((((..((((..(((..(((....(((....))).)))...)))..))))..)))).....................(((((((......)))))))..... (-19.67 = -18.90 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:01 2006